Open Access Research article

Ancestral synteny shared between distantly-related plant species from the asterid (Coffea canephora and Solanum Sp.) and rosid (Vitis vinifera) clades

Romain Guyot1, Florent Lefebvre-Pautigny2, Christine Tranchant-Dubreuil1, Michel Rigoreau2, Perla Hamon1, Thierry Leroy3, Serge Hamon1, Valérie Poncet1, Dominique Crouzillat2 and Alexandre de Kochko1*

Author Affiliations

1 UMR DIADE, Evolution et Dynamique des Génomes, Institut de Recherche pour le Développement (IRD), BP 64501, 34394 Montpellier Cedex 5, France

2 Nestlé R&D Center, 101 Avenue Gustave Eiffel, Notre Dame d'Oé, BP 49716, 37097 Tours Cedex 2, France

3 CIRAD, UMR AGAP, Montpellier F-34398, France

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BMC Genomics 2012, 13:103  doi:10.1186/1471-2164-13-103

Published: 20 March 2012

Additional files

Additional file 1:

Figure S1 Macrosyntenic Relationships between each of the 11 Coffee Linkage Groups and the 12 Tomato Linkage Groups based on Mapped Coffee COSII Loci.

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Additional file 2:

Table S1 Syntenic Blocks between Coffee and Tomato Linkage Groups.

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Additional file 3:

Table S2 Distribution of the Coffee COSII Sequences Mapped on Grapevine Pseudo-Chromosomes.

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Additional file 4:

Table S3 Syntenic Blocks between Coffee Tree Linkage Groups and the Pseudo-Chromosomes of the Grapevine Genome.

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Additional file 5:

Table S4 Syntenic Blocks between Tomato Chromosomes and the Pseudo-Chromosomes of the Grapevine Genome.

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Additional file 6:

Figure S2 Detailed Examples of Macrosynteny between the Coffee Tree, the Tomato and the Grapevine.

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Additional file 7:

Table S5 List of Identified Genes in the Coffee Tree (C. canephora) BAC clone 111O18.

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Additional file 8:

Physical map and annotation of the 174,135 bp of the C. canephora BAC clone 111O18.

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Additional file 9:

Table S6 List of orthologous predicted genes in the ovate regions of C. canephora, Solanaceae and the grapevine genome.

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