Research article
Ancestral synteny shared between distantly-related plant species from the asterid (Coffea canephora and Solanum Sp.) and rosid (Vitis vinifera) clades
- † Equal contributors
1 UMR DIADE, Evolution et Dynamique des Génomes, Institut de Recherche pour le Développement (IRD), BP 64501, 34394 Montpellier Cedex 5, France
2 Nestlé R&D Center, 101 Avenue Gustave Eiffel, Notre Dame d'Oé, BP 49716, 37097 Tours Cedex 2, France
3 CIRAD, UMR AGAP, Montpellier F-34398, France
BMC Genomics 2012, 13:103 doi:10.1186/1471-2164-13-103
Published: 20 March 2012Additional files
Additional file 1:
Figure S1 Macrosyntenic Relationships between each of the 11 Coffee Linkage Groups and the 12 Tomato Linkage Groups based on Mapped Coffee COSII Loci.
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Additional file 2:
Table S1 Syntenic Blocks between Coffee and Tomato Linkage Groups.
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Additional file 3:
Table S2 Distribution of the Coffee COSII Sequences Mapped on Grapevine Pseudo-Chromosomes.
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Additional file 4:
Table S3 Syntenic Blocks between Coffee Tree Linkage Groups and the Pseudo-Chromosomes of the Grapevine Genome.
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Additional file 5:
Table S4 Syntenic Blocks between Tomato Chromosomes and the Pseudo-Chromosomes of the Grapevine Genome.
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Additional file 6:
Figure S2 Detailed Examples of Macrosynteny between the Coffee Tree, the Tomato and the Grapevine.
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Additional file 7:
Table S5 List of Identified Genes in the Coffee Tree (C. canephora) BAC clone 111O18.
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Additional file 8:
Physical map and annotation of the 174,135 bp of the C. canephora BAC clone 111O18.
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Additional file 9:
Table S6 List of orthologous predicted genes in the ovate regions of C. canephora, Solanaceae and the grapevine genome.
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