Table 3

Gene ontology enrichment analysis for the genes differentially expressed between WT and MT during fruit development and ripening

Category

Library pair

Enriched GO terms

Cluster frequency

P-value

Genes in group

Molecular function

WT150vsMT150

capsanthin/capsorubin synthase activity

1.2%

0.003

TC5834, TC9367

sulfotransferase activity

1.5%

0.010

TC5490, DN620599

WT190vsMT190

transferase activity, transferring glycosyl groups

9.3%

0.006

EY691346, TC18663, TC10188, TC8764, TC320, TC9277, TC11658, EY679857, TC24546, TC11943, TC8402, CK939135, TC15309, TC22218, EY661193

protein N-terminus binding

1.2%

0.031

TC2476, TC10188

WT220vsMT220

fructokinase activity

1.5%

0.019

TC9238, EY702245, TC17456

sulfotransferase activity

1.0%

0.030

TC5490, DN620599

Biological process

WT120vsMT120

cell wall organization

5.1%

0.021

TC4981, CK933828, DN618740, EY725863, TC18738, TC3660, TC12562, EY746957, TC14614

protein import into nucleus, docking

1.7%

0.034

EY701416, EY733548, DY305879

WT150vsMT150

carotenoid metabolic process

3.3%

0.043

EY722043, TC15628, TC5834, TC9367

Yu et al. BMC Genomics 2012 13:10   doi:10.1186/1471-2164-13-10