Table 2 |
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|
List of 10 genes involved in major processes associated with fruit development and ripening based on Gene Ontology categorization |
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|
Go term |
Gene identifier |
Gene discription |
150vs120 Fold change |
190vs150 Fold change |
220vs190 Fold change |
|
|
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|
carotenoid |
TC14030 |
Zeta-carotene desaturase |
4.94 |
- |
2.19 |
|
metabolic |
TC15628 |
Zeta-carotene desaturase |
6.59/0 |
- |
2.93 |
|
process |
TC19375 |
carotenoid isomerase |
3.33 |
0.19 |
- |
|
TC3 |
Phytoene desaturase |
6.18 |
- |
2.19 |
|
|
TC4815 |
Epsilon lycopene cyclase |
3.1 |
- |
- |
|
|
TC5834 |
Capsanthin/capsorubin synthase |
0.35 |
8.39 |
0.55 |
|
|
CN187831 |
Zeta-carotene desaturase |
- |
- |
1.2/0 |
|
|
EY722043 |
Phytoene synthase |
- |
1.36 |
- |
|
|
TC26011 |
Zeta-carotene desaturase |
- |
0/3.43 |
1.2/0 |
|
|
TC5 |
Lycopene beta-cyclase |
- |
2.88 |
- |
|
|
cell wall |
EY676350 |
Reversibly glycosylated protein |
0.13 |
9.53 |
1.81 |
|
organization |
EY727139 |
Alpha-expansin 3 |
0/1.19 |
- |
- |
|
TC4398 |
Pectinesterase-3 precursor |
0.57 |
1.43 |
0.31 |
|
|
EY700757 |
Pectinesterase-1 precursor |
- |
- |
0.26 |
|
|
EY743186 |
Alpha-expansin precursor |
- |
1.48/0 |
- |
|
|
TC14614 |
Pectinesterase PPE8B precursor |
- |
0.09 |
0/0.99 |
|
|
TC25537 |
Xyloglucan endotransglucosylase |
- |
0/1.58 |
- |
|
|
EY738078 |
Expansin |
- |
5.17/0 |
- |
|
|
EY679620 |
Cellulose synthase |
0.3 |
0.33 |
0.2 |
|
|
EY679934 |
Cellulose synthase |
0.51 |
0.23 |
- |
|
|
sucrose |
TC11046 |
Sucrose synthase |
0.32 |
0.39 |
0.41 |
|
metabolic |
EY743126 |
Sucrose-phosphate synthase 1 |
7.65/0 |
- |
1.77 |
|
process |
TC14378 |
Sucrose-phosphate synthase 1 |
3.28 |
- |
2.53 |
|
TC20096 |
Sucrose synthase |
1.85/0 |
0/1.85 |
1.44/0 |
|
|
EY719381 |
Sucrose-phosphate synthase 1 |
- |
- |
0.37 |
|
|
CX044648 |
Sucrose synthase |
- |
0.1875 |
- |
|
|
EY667747 |
Sucrose-phosphate synthase |
- |
- |
- |
|
|
EY677217 |
Sucrose-phosphate synthase |
- |
- |
8.43 |
|
|
oxygen and |
EY680864 |
Superoxide dismutase |
5.28/0 |
- |
0.25 |
|
reactive |
EY741543 |
Superoxide dismutase [Cu-Zn] |
1.78 |
- |
1.69 |
|
oxygen |
TC12069 |
Cu/Zn superoxide dismutase |
32.18/0 |
0.62 |
- |
|
species |
TC14743 |
Cu/Zn-superoxide dismutase copper chaperone precursor |
2.71 |
- |
- |
|
TC2154 |
Superoxide dismutase [Cu-Zn] |
2.67 |
0.36 |
3.72 |
|
|
TC22348 |
Superoxide dismutase |
4.22 |
- |
- |
|
|
TC23992 |
Superoxide dismutase |
11.34/0 |
0.61 |
2.47 |
|
|
CN189455 |
Superoxide dismutase [Mn], mitochondrial precursor |
3.69/0 |
2.07 |
- |
|
|
TC4680 |
Superoxide dismutase |
3.55 |
2.87 |
1.48 |
|
|
TC19068 |
Cu/Zn-superoxide dismutase copper chaperone precursor |
- |
- |
- |
|
|
Response |
CF836240 |
Peroxidase precursor |
0.31 |
- |
0/3.69 |
|
to stress |
CK701553 |
Heat shock protein 70 |
0.19 |
- |
0.26 |
|
EY676086 |
Serine/threonine-protein phosphatase PP1 |
2.37/0 |
- |
- |
|
|
EY735114 |
Plastid enolase |
4.68 |
- |
2 |
|
|
TC18825 |
2-oxoacid dehydrogenase family protein |
3.97 |
0.54 |
2.81 |
|
|
TC21917 |
Methionine synthase |
2.11/0 |
- |
- |
|
|
TC3575 |
22 kDa polypeptide |
1.12 |
- |
0.92 |
|
|
EY730377 |
Group 5 late embryogenesis abundant protein |
- |
- |
2.03 |
|
|
TC20176 |
Osmotin-like |
- |
- |
0/0.99 |
|
|
TC8117 |
Thaumatin-like protein |
- |
20.91 |
3.63 |
|
|
|
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|
For each gene, the number given at each stage indicates that the level of expression differed significantly compared with the level at the former stage; -, no significant difference; 0, zero detectable expression, for example, 6.59/0 indicates that the expression was not detected at the earlier sampling stage, but showed a transcript level of 6.59 at the current one. |
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|
Yu et al. BMC Genomics 2012 13:10 doi:10.1186/1471-2164-13-10 |
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