Table 9

Number of positive, out of frame upstream and downstream negative sequences (OFN) with a window size of -10+30. Compares the two approaches: with and without the inclusion of the acquired knowledge method (InAKnow).

Without InAKnow

With InAKnow


Positives

Up. Negatives

Down. Negatives

Positives

Up. Negatives

Down. Negatives


Arabidopsis thaliana

24339

17267

570619

68572

17267

526386

Caenorhabditis elegans

8763

6188

443052

57989

6188

393826

Drosophila melanogaster

19782

31269

404623

76907

31269

347498

Homo sapiens

15845

17495

336111

62212

17495

289744

Nasonia vitripennis

31

19

315

181

19

165


Total quantity of mRNA for organisms Arabidopsis thaliana, Caenorhabditis elegans, Drosophila melanogaster, Homo sapiens and Nasonia vitripennis are respectively 33200, 23894, 22303, 16264 and 35. Download in 05/03/2011.

Silva et al. BMC Genomics 2011 12(Suppl 4):S9   doi:10.1186/1471-2164-12-S4-S9

Open Data