Table 5

Comparison of performance as a function of the inclusion of features for the Rattus novergicus organism.

Features

Ac

Pr

Se

Sp

Adj


No

97,14 (0,76)

19,35 (4,36)

82,09 (14,05)

97,26 (0,79)

89,67 (6,91)

ATG + STOP + GAG

95,38 (1,09)

13,54 (3,65)

88,09 (9,82)

96,54 (1,13)

92,32 (4,61)

ATG + STOP

95,64 (0,82)

13,83 (2,18)

88,09 (8,74)

95,69 (0,87)

91,89 (4,08)

ATG+STOP+CTG+GAC+GAG

96,48 (0,78)

16,93 (3,81)

88,09 (9,88)

95,44 (0,89)

91,76 (4,35)

ATG + STOP + CTG + GAC

95,03 (1,19)

12,68 (2,94)

88,09 (9,44)

95,08 (1,20)

91,58 (4,75)

ATG+STOP+CTG+GAC+GAG+GCC

96,38 (0,63)

16,06 (2,34)

87,18 (8,87)

96,45 (0,64)

91,82 (4,40)

ATG + GAC

96,57 (0,74)

17,09 (3,55)

87,09 (10,08)

96,64 (0,76)

91,86 (4,93)

ATG + CTG

96,42 (0,53)

16,22 (1,72)

87,09 (9,82)

96,49 (0,58)

91,79 (4,76)

STOP + GAC

96,30 (0,82)

16,08 (3,59)

87,09 (10,08)

96,37 (0,84)

91,73 (4,97)

ATG + STOP + GCC

96,11 (0,61)

15,52 (2,19)

87,09 (8,30)

96,15 (0,63)

91,62 (4,04)

ATG + STOP + GAC

95,68 (1,24)

14,55 (3,72)

87,09 (8,74)

95,73 (1,28)

91,41 (4,03)

ATG + STOP + CTG

94,97 (1,16)

12,54 (2,90)

87,09 (9,45)

95,02 (1,18)

91,05 (4,70)

ATG + GAG

96,70 (0,61)

17,54 (3,11)

86,09 (10,79)

96,76 (0,62)

91,42 (5,35)

ATG

96,32 (0,83)

15,97 (3,29)

86,09 (9,21)

96,40 (0,84)

91,24 (4,54)

STOP

95,99 (0,81)

14,62 (2,50)

86,09 (12,03)

96,07 (0,84)

91,08 (5,88)

ATG + GCC

96,93 (0,56)

18,05 (2,71)

84,09 (12,85)

97,02 (0,61)

90,56 (6,25)

STOP + CTG

95,86 (0,86)

14,04 (2,97)

84,09 (13,61)

95,95 (0,89)

90,02 (6,70)

STOP + GAG

96,36 (0,65)

15,51 (2,66)

84,09 (14,32)

96,45 (0,70)

90,27 (7,00)

CTG + GAC

96,84 (0,85)

17,90 (3,56)

83,09 (11,06)

96,94 (0,88)

90,01 (5,40)

GAG

97,35 (0,47)

20,13 (4,17)

82,09 (14,05)

97,46 (0,48)

89,78 (6,99)

GAC

96,99 (0,37)

17,82 (2,22)

82,09 (14,05)

97,10 (0,43)

89,59 (6,90)

GAG + GCC

91,65 (0,39)

22,00 (2,82)

81,18 (14,45)

97,77 (0,46)

89,48 (7,07)

CTG + GAG

97,25 (0,51)

19,32 (3,60)

81,18 (15,78)

97,37 (0,55)

89,28 (7,79)

CTG + GCC

97,47 (0,53)

21,04 (5,05)

81,09 (14,51)

97,59 (0,54)

89,34 (7,24)

GAC + GCC

97,54 (0,71)

21,73 (3,83)

80,09 (14,90)

97,67 (0,77)

88,88 (7,23)

GCC

97,52 (0,41)

20,74 (3,73)

80,09 (18,49)

97,65 (0,47)

88,87 (9,13)

GAC + GAG

97,50 (0,38)

20,79 (4,97)

80,09 (15,55)

97,63 (0,35)

88,86 (7,80)

CTG + GAC + GAG

97,05 (0,64)

18,25 (4,06)

80,09 (14,90)

97,18 (0,64)

88,64 (7,43)

CTG + GAC + GAG + GCC

97,52 (0,45)

20,75 (4,44)

79,09 (17,06)

97,66 (0,46)

88,37 (8,49)

STOP + GCC

96,91 (0,54)

17,15 (3,47)

79,09 (17,06)

97,05 (0,59)

88,07 (8,41)

CTG

96,69 (0,72)

16,20 (3,51)

78,18 (17,80)

96,83 (0,78)

87,50 (8,71)


These results were obtained using a window size of -10+30 and the M-Clus method. The method of including acquired knowledge, InAKnow, was not used.

Silva et al. BMC Genomics 2011 12(Suppl 4):S9   doi:10.1186/1471-2164-12-S4-S9

Open Data