Table 4

Comparison of performance as a function of the inclusion of features for the Mus musculus organism.

Features

Ac

Pr

Se

Sp

Adj


No

95.23 (1.09)

46.44 (9.42)

82.13 (8.94)

95.79 (1.12)

88.96 (4.48)

ATG + STOP + GAG

94.54 (1.15)

43.05 (6.18)

91.55 (3.76)

94.68 (1.14)

93.11 (2.13)

ATG+STOP+CTG+GAC+GAG

94.48 (1.11)

42.69 (4.85)

90.88 (4.80)

94.64 (1.20)

92.76 (2.27)

ATG + STOP

94.54 (0.89)

42.83 (5.44)

90.59 (4.56)

94.72 (0.95)

92.66 (2.26)

ATG + STOP + CTG + GAC

94.54 (1.40)

43.35 (6.77)

90.30 (4.91)

94.72 (1.45)

92.51 (2.53)

ATG+STOP+CTG+GAC+GAG+GCC

94.54 (0.99)

42.72 (4.76)

89.44 (5.08)

94.77 (0.98)

92.11 (2.66)

ATG

94.85 (1.28)

45.02 (8.66)

89.34 (4.38)

95.09 (1.37)

92.21 (2.18)

ATG + STOP + GCC

94.54 (1.18)

43.02 (6.56)

89.34 (5.01)

94.77 (1.23)

92.06 (2.55)

ATG + STOP + GAC

94.66 (1.34)

43.89 (7.62)

88.86 (4.37)

94.91 (1.41)

91.89 (2.20)

ATG + STOP + CTG

94.70 (1.17)

43.68 (5.90)

88.57 (4.12)

94.96 (1.20)

91.77 (2.18)

ATG + CTG

94.86 (1.18)

44.65 (6.69)

88.47 (3.44)

95.14 (1.23)

91.81 (1.79)

ATG + GAG

94.70 (1.41)

44.25 (8.95)

88.09 (4.69)

94.98 (1.45)

91.53 (2.49)

ATG + GCC

95.12 (1.11)

46.03 (6.78)

88.00 (5.92)

95.44 (1.14)

91.72 (3.02)

ATG + GAC

95.26 (0.78)

46.42 (5.63)

87.42 (5.41)

95.60 (0.81)

91.51 (2.70)

STOP + GAC

94.48 (1.31)

42.31 (7.73)

85.01 (8.51)

94.88 (1.19)

89.95 (4.52)

STOP + CTG

94.25 (1.35)

41.52 (7.51)

84.72 (5.71)

94.66 (1.42)

89.69 (2.88)

STOP

94.08 (1.23)

40.13 (7.01)

82.61 (8.31)

94.58 (1.19)

88.60 (4.30)

STOP + GAG

94.48 (1.49)

42.61 (8.69)

82.33 (8.27)

95.01 (1.48)

88.67 (4.30)

GCC

94.74 (1.14)

43.52 (7.86)

82.13 (8.77)

95.28 (1.22)

88.71 (4.31)

CTG + GAG

94.80 (1.13)

44.05 (8.56)

81.94 (7.69)

95.36 (1.21)

88.65 (3.80)

CTG + GAC + GAG

94.53 (1.11)

42.20 (6.34)

81.94 (9.26)

95.08 (1.14)

88.51 (4.60)

STOP + GCC

93.97 (1.45)

40.05 (7.72)

81.94 (7.69)

94.50 (1.60)

88.22 (3.70)

GAG

94.78 (1.14)

43.85 (8.45)

81.56 (9.38)

95.36 (1.23)

88.46 (4.63)

CTG

94.74 (1.36)

43.96 (9.04)

81.56 (9.22)

95.31 (1.49)

88.44 (4.50)

GAC

94.85 (1.13)

44.03 (7.79)

81.46 (8.75)

95.42 (1.10)

88.44 (4.45)

GAG + GCC

94.88 (1.34)

44.33 (8.70)

81.26 (8.89)

95.46 (1.23)

88.36 (4.70)

GAC + GAG

94.95 (1.10)

44.77 (8.06)

81.17 (9.00)

95.55 (1.21)

88.36 (4.39)

CTG + GAC

95.00 (1.11)

45.00 (8.98)

81.08 (8.16)

95.60 (1.15)

88.43 (4.11)

CTG + GAC + GAG + GCC

94.77 (1.22)

43.62 (8.15)

80.98 (8.27)

95.36 (1.18)

88.17 (4.28)

CTG + GCC

94.39 (1.34)

41.82 (8.03)

80.98 (8.45)

94.96 (1.41)

87.97 (4.18)

GAC + GCC

94.34 (1.06)

41.07 (6.78)

80.21 (9.11)

94.95 (1.11)

87.58 (4.50)


These results were obtained using a window size of -10+30 and the M-(Clus method. The method of including acquired knowledge, InAKnow, was not used.

Silva et al. BMC Genomics 2011 12(Suppl 4):S9   doi:10.1186/1471-2164-12-S4-S9

Open Data