Table 4 |
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|
Comparison of performance as a function of the inclusion of features for the Mus musculus organism. |
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|
Features |
Ac |
Pr |
Se |
Sp |
Adj |
|
|
|||||
|
No |
95.23 (1.09) |
46.44 (9.42) |
82.13 (8.94) |
95.79 (1.12) |
88.96 (4.48) |
|
ATG + STOP + GAG |
94.54 (1.15) |
43.05 (6.18) |
91.55 (3.76) |
94.68 (1.14) |
93.11 (2.13) |
|
ATG+STOP+CTG+GAC+GAG |
94.48 (1.11) |
42.69 (4.85) |
90.88 (4.80) |
94.64 (1.20) |
92.76 (2.27) |
|
ATG + STOP |
94.54 (0.89) |
42.83 (5.44) |
90.59 (4.56) |
94.72 (0.95) |
92.66 (2.26) |
|
ATG + STOP + CTG + GAC |
94.54 (1.40) |
43.35 (6.77) |
90.30 (4.91) |
94.72 (1.45) |
92.51 (2.53) |
|
ATG+STOP+CTG+GAC+GAG+GCC |
94.54 (0.99) |
42.72 (4.76) |
89.44 (5.08) |
94.77 (0.98) |
92.11 (2.66) |
|
ATG |
94.85 (1.28) |
45.02 (8.66) |
89.34 (4.38) |
95.09 (1.37) |
92.21 (2.18) |
|
ATG + STOP + GCC |
94.54 (1.18) |
43.02 (6.56) |
89.34 (5.01) |
94.77 (1.23) |
92.06 (2.55) |
|
ATG + STOP + GAC |
94.66 (1.34) |
43.89 (7.62) |
88.86 (4.37) |
94.91 (1.41) |
91.89 (2.20) |
|
ATG + STOP + CTG |
94.70 (1.17) |
43.68 (5.90) |
88.57 (4.12) |
94.96 (1.20) |
91.77 (2.18) |
|
ATG + CTG |
94.86 (1.18) |
44.65 (6.69) |
88.47 (3.44) |
95.14 (1.23) |
91.81 (1.79) |
|
ATG + GAG |
94.70 (1.41) |
44.25 (8.95) |
88.09 (4.69) |
94.98 (1.45) |
91.53 (2.49) |
|
ATG + GCC |
95.12 (1.11) |
46.03 (6.78) |
88.00 (5.92) |
95.44 (1.14) |
91.72 (3.02) |
|
ATG + GAC |
95.26 (0.78) |
46.42 (5.63) |
87.42 (5.41) |
95.60 (0.81) |
91.51 (2.70) |
|
STOP + GAC |
94.48 (1.31) |
42.31 (7.73) |
85.01 (8.51) |
94.88 (1.19) |
89.95 (4.52) |
|
STOP + CTG |
94.25 (1.35) |
41.52 (7.51) |
84.72 (5.71) |
94.66 (1.42) |
89.69 (2.88) |
|
STOP |
94.08 (1.23) |
40.13 (7.01) |
82.61 (8.31) |
94.58 (1.19) |
88.60 (4.30) |
|
STOP + GAG |
94.48 (1.49) |
42.61 (8.69) |
82.33 (8.27) |
95.01 (1.48) |
88.67 (4.30) |
|
GCC |
94.74 (1.14) |
43.52 (7.86) |
82.13 (8.77) |
95.28 (1.22) |
88.71 (4.31) |
|
CTG + GAG |
94.80 (1.13) |
44.05 (8.56) |
81.94 (7.69) |
95.36 (1.21) |
88.65 (3.80) |
|
CTG + GAC + GAG |
94.53 (1.11) |
42.20 (6.34) |
81.94 (9.26) |
95.08 (1.14) |
88.51 (4.60) |
|
STOP + GCC |
93.97 (1.45) |
40.05 (7.72) |
81.94 (7.69) |
94.50 (1.60) |
88.22 (3.70) |
|
GAG |
94.78 (1.14) |
43.85 (8.45) |
81.56 (9.38) |
95.36 (1.23) |
88.46 (4.63) |
|
CTG |
94.74 (1.36) |
43.96 (9.04) |
81.56 (9.22) |
95.31 (1.49) |
88.44 (4.50) |
|
GAC |
94.85 (1.13) |
44.03 (7.79) |
81.46 (8.75) |
95.42 (1.10) |
88.44 (4.45) |
|
GAG + GCC |
94.88 (1.34) |
44.33 (8.70) |
81.26 (8.89) |
95.46 (1.23) |
88.36 (4.70) |
|
GAC + GAG |
94.95 (1.10) |
44.77 (8.06) |
81.17 (9.00) |
95.55 (1.21) |
88.36 (4.39) |
|
CTG + GAC |
95.00 (1.11) |
45.00 (8.98) |
81.08 (8.16) |
95.60 (1.15) |
88.43 (4.11) |
|
CTG + GAC + GAG + GCC |
94.77 (1.22) |
43.62 (8.15) |
80.98 (8.27) |
95.36 (1.18) |
88.17 (4.28) |
|
CTG + GCC |
94.39 (1.34) |
41.82 (8.03) |
80.98 (8.45) |
94.96 (1.41) |
87.97 (4.18) |
|
GAC + GCC |
94.34 (1.06) |
41.07 (6.78) |
80.21 (9.11) |
94.95 (1.11) |
87.58 (4.50) |
|
|
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|
These results were obtained using a window size of -10+30 and the M-(Clus method. The method of including acquired knowledge, InAKnow, was not used. |
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|
Silva et al. BMC Genomics 2011 12(Suppl 4):S9 doi:10.1186/1471-2164-12-S4-S9 |
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