Table 12

Comparison with other TIS prediction tools.

Mus musculus


TP

FP

TN

FN

Ac

Pr

Se

Sp

Adj


First-ATG

47

61

0

0

43.52

43.52

-

-

-

NetStart

72

21

113

15

83.71

77.42

82.76

84.33

83.54

TIS Miner

82

15

134

11

89.26

84.54

88.17

89.93

89.05

ATGpr

90

18

155

0

93.15

83.33

-

89.59

-

Our methodology

85

17

73

6

87.29

83.33

93.41

81.11

87.26


Rattus norvegicus


TP

FP

TN

FN

Ac

Pr

Se

Sp

Adj


First-ATG

97

30

0

0

76.38

90.65

-

-

-

NetStart

52

33

64

42

66.49

61.18

55.32

65.98

60.6

TIS Miner

53

73

75

1

63.36

42.40

98.15

50.67

74.71

ATGpr

100

27

78

0

86.83

78.74

-

74.28

-

Our methodology

32

34

52

0

71.19

48.48

-

60.46

-


Silva et al. BMC Genomics 2011 12(Suppl 4):S9   doi:10.1186/1471-2164-12-S4-S9

Open Data