Table 1

Online resources for the reconstruction of the metabolic network of Chlamydomonas reinhardtii

Database

Link


Genome Database

DOE Joint Genome Institute (JGI); Chlamydomonas reinhardtii v4.0

http://genome.jgi-psf.org/Chlre4/Chlre4.home.html webcite

An Online Informatics Resource for Chlamydomonas (Chlamy Center)

http://www.chlamy.org/chlamydb.html webcite


Pathway Databases

Kyoto Encyclopedia of Genes and Genomes (KEGG)

http://www.genome.jp/kegg/pathway.html webcite

ChlamyCyc

http://chlamyto.mpimp-golm.mpg.de/chlamycyc/index.jsp webcite

Metacyc

http://metacyc.org/ webcite

ExPASy Biochemical Pathways

http://www.expasy.ch/cgi-bin/search-biochem-index webcite


Enzymes Databases

ExPASy Enzyme Database

http://ca.expasy.org/enzyme/ webcite

http://www.brenda-enzymes.info/ webcite


Enzyme/Protein Localization and others Databases*

AraPerox (Arabidopsis Protein from Plant Peroxisomes)

http://www.araperox.uni-goettingen.de/ webcite

SUBA (Arabidopsis subcellular database)

http://www.plantenergy.uwa.edu.au/applications/suba2/index.php webcite

PPDB (Plant proteome database)

http://ppdb.tc.cornell.edu/default.aspx webcite

UniproKB/SwissProt

http://ca.expasy.org/sprot/relnotes/relstat.html webcite

Transport DB

http://www.membranetransport.org/ webcite


*Manual curation based on literature and homology sequence.

Gomes de Oliveira Dal’Molin et al. BMC Genomics 2011 12(Suppl 4):S5   doi:10.1186/1471-2164-12-S4-S5

Open Data