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This article is part of the supplement: Tenth International Conference on Bioinformatics. First ISCB Asia Joint Conference 2011 (InCoB/ISCB-Asia 2011): Computational Biology

Open Access Proceedings

Extracting regulatory modules from gene expression data by sequential pattern mining

Mingoo Kim1, Hyunjung Shin2, Tae Su Chung1, Je-Gun Joung134 and Ju Han Kim135*

  • * Corresponding author: Ju Han Kim juhan@snu.ac.kr

  • † Equal contributors

Author Affiliations

1 Seoul National University Biomedical Informatics (SNUBI), Seoul National University College of Medicine, Seoul 110799, Korea

2 Dept. of Industrial and Information Systems Engineering, Ajou University, Suwon 443749, Korea

3 Systems Biomedical Informatics National Core Research Center, Seoul National University College of Medicine, Seoul 110799, Korea

4 Institute of Endemic Diseases, Seoul National University College of Medicine, Seoul 110799, Korea

5 Div. of Biomedical Informatics, Seoul National University College of Medicine, Seoul 110799, Korea

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BMC Genomics 2011, 12(Suppl 3):S5  doi:10.1186/1471-2164-12-S3-S5

Published: 30 November 2011

Additional files

Additional file 1:

Details of benchmark Details of benchmark, such as the generation of simulation data and the parameter selection

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Additional file 2:

GO-slim terms and SMD-sample categories Gene Ontology (GO) slim terms (of Biological Process) defined by SGD and SMD categories which describe the experimental context of microarray samples

Format: XLS Size: 44KB Download file

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