Table 1

Summary of number of PPIs in each STRING prediction approaches

STRING database prediction method

Number of PPIs

STRING database prediction method

Number of PPIs


Neighbourhood

12,706

Transferred neighborhood

78,376

Co-expression

0

Transferred co-expression

4,393

Experiments

4

Transferred experimental

4,129

Databases

7,030

Transferred databases

629

Text mining

2,715

Transferred text mining

11,074

Gene fusion

2,646

Co-occurrence

159,213


All STRING database PPIs

248,574


Summary of various subsets of H37Rv PPIs in STRING and their sources.

Zhou and Wong BMC Genomics 2011 12(Suppl 3):S20   doi:10.1186/1471-2164-12-S3-S20

Open Data