Table 2

Top 15 most represented protein domains found in ES proteins using Interproscan

InterPro description

InterPro code

Number of ES proteins (%)


Protein Kinase like domain

IPR011009

126 (4.90)

Protein kinase, catalytic domain

IPR000719

114 (4.43)

Serine/threonine-protein kinase like domain

IPR017442

99 (3.85)

Serine/threonine-protein kinase domain

IPR002290

64 (2.49)

Serine/threonine-protein kinase active site

IPR008271

52 (2.02)

WD40 repeat like domain

IPR011046

40 (1.55)

WD40 repeat subgroup

IPR019781

39 (1.52)

WD40/YVTN repeat like domain

IPR015943

39 (1.52)

WD40 repeat

IPR001680

39 (1.52)

WD40 repeat domain

IPR017986

38 (1.47)

Tyrosine-protein kinase catalytic domain

IPR020635

37 (1.44)

WD40 repeat 2

IPR019782

37 (1.44)

Helicase C

IPR001650

35 (1.36)

NAD(P)-binding domain

IPR016040

29 (1.13)

Immunoglobulin-like fold

IPR013783

28 (1.09)


Garg and Ranganathan BMC Genomics 2011 12(Suppl 3):S14   doi:10.1186/1471-2164-12-S3-S14

Open Data