Email updates

Keep up to date with the latest news and content from BMC Genomics and BioMed Central.

This article is part of the supplement: Tenth International Conference on Bioinformatics. First ISCB Asia Joint Conference 2011 (InCoB/ISCB-Asia 2011): Computational Biology

Open Access Proceedings

In silico secretome analysis approach for next generation sequencing transcriptomic data

Gagan Garg1 and Shoba Ranganathan12*

Author Affiliations

1 Dept. of Chemistry and Biomolecular Sciences, Macquarie University, Sydney NSW 2109, Australia

2 Dept. of Biochemistry, Yong Loo Lin School of Medicine, National University of Singapore, 8 Medical Drive, Singapore 117597

For all author emails, please log on.

BMC Genomics 2011, 12(Suppl 3):S14  doi:10.1186/1471-2164-12-S3-S14

Published: 30 November 2011

Additional files

Additional file 1:

Protein domain mapping of S. ratti ES proteins. Represented Interpro domains found in S. ratti ES proteins using Interproscan (sheet1). Protein domains mapping of S. ratti excretory/secretory proteins (sheet2).

Format: XLS Size: 411KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 2:

KEGG pathways mapping of S. ratti ES proteins. Represented KEGG pathways found in ES proteins predicted by KAAS (Table S2).

Format: PDF Size: 14KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 3:

KEGG BRITE objects mapping of S. ratti ES proteins. Represented KEGG BRITE objects found in ES proteins predicted by KAAS (Table S3).

Format: PDF Size: 8KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 4:

RNAi Phenotype mapping of S. ratti ES proteins. RNAi Phenotype mapping of S. ratti ES proteins against known C. elegans known phenotypes (sheet1).

Format: XLS Size: 341KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 5:

Representative therapeutic targets set of S. ratti ES proteins. Representative therapeutic targets set of S. ratti ES proteins, homologous to C. elegans proteins with lethal RNAi phenotype and with no homologue in the host, rat.

Format: PDF Size: 23KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data