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This article is part of the supplement: Selected articles from the IEEE International Conference on Bioinformatics and Biomedicine 2010

Open Access Proceedings

Gene Cluster Profile Vectors: a method to infer functionally related gene sets by grouping proximity-based gene clusters

Vikas Rao Pejaver and Sun Kim*

Author Affiliations

School of Informatics and Computing, Indiana University, 150 S Woodlawn Ave, Bloomington, IN 47405, USA

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BMC Genomics 2011, 12(Suppl 2):S2  doi:10.1186/1471-2164-12-S2-S2

Published: 27 July 2011

Additional files

Additional file 1:

Comparison of clusters of operons generated for E. coli Each entry corresponds to a cluster of operon for the particular reference set size. Clusters from each set were manually compared and placed together in the same row. The clusters are mostly reproduced even with changes in set size. Most of the clusters unique to certain reference sets are a result of cluster-splitting due to the fixed tree-cut height used during hierarchical clustering.

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