Table 5

Repetitive transposon classification

Transposon class

Number of elements

Total length

Percentage of sequence


Retroelements

416

51,070

0.17%

LINE/L1

38

2,458

0.01%

LTR

378

48,612

0.16%

Copia

183

21,750

0.07%

Gypsy

195

26,862

0.09%

DNA transposons

269

22,699

0.07%

hobo-Activator

20

2,022

0.01%

Tc1-IS630-Pogo

1

46

0.00%

En-Spm

180

13,395

0.04%

MuDR-IS905

33

1,834

0.00%

Harbinger

6

368

0.00%

Rolling circle Helitrons

29

5,034

0.02%


Classification and frequency statistics for repetitive elements identified by RepeatMasker. The database used to screen unigenes was built with repeat sequences identified in RepBase as belonging to land plants (Embryophyta).

Der et al. BMC Genomics 2011 12:99   doi:10.1186/1471-2164-12-99

Open Data