Table 2

Summarized information on sRNAs verified in this study

sRNAs

strand

upstream gene

downstream gene

5' end

3' end

size (nt)

No.

prediction


sRNA-Xoo1

+

PXO_02602

PXO_02603

4451914a

4452016b

103c; ~100d

1

NC-211

sRNA-Xoo2

+

PXO_01687

PXO_01686

3205976b

3206053b

78 e ~100d;

1

N

~85d

sRNA-Xoo3

+

PXO_03614

PXO_03613

250669a

250761b

93c; ~80d

2

NC-137

sRNA-Xoo4

-

PXO_05774

PXO_02847

4955974a

4955830b

145c; ~150d

99

N

sRNA-Xoo5

+

PXO_00354

PXO_00353

2045785a

2045908b

124c;~130d;

2

NC-123

~100d

sRNA-Xoo6

-

PXO_03506

PXO_03507

5217958b

5217771b

188 e ~250d

7

NC-248

sRNA-Xoo7

-

PXO_04745

PXO_04746

1379160a

1378796b

365c;~300d

1

NC-40

sRNA-Xoo8

+

PXO_04362

PXO_04361

1067954b

1068276b

323e;~300d

6

NC-87


aEnds determined by 5' RACE mapping (5' RACE results are given in Additional file 4)

bEnds determined by cloned sequences.

cSize determined by RACE analysis

dSize observed in Northern blot analysis.

eSize determined by cloned sequences.

No.: number of cloned sequences in our cDNA library

Liang et al. BMC Genomics 2011 12:87   doi:10.1186/1471-2164-12-87

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