Research article
Comparative analysis of pepper and tomato reveals euchromatin expansion of pepper genome caused by differential accumulation of Ty3/Gypsy-like elements
- † Equal contributors
1 Interdisciplinary Program in Agriculture Biotechnology, Seoul National University, Seoul 151-921, Korea
2 Plant Genomics and Breeding Institute, Seoul National University, Seoul 151-921, Korea
3 Seeders Inc., Daejeon, Korea
4 Bioinformatics Research Center, KRIBB, Daejeon, 305-806, Korea
5 Department of Plant Science, Seoul National University, Seoul, 151-921, Korea
6 Fungal Bioinformatics Laboratory, Seoul National University, Seoul 151-921, Korea
7 Center for Fungal Pathogenesis, Seoul National University, Seoul 151-921, Korea
8 Department of Agricultural Biotechnology, Seoul National University, Seoul 151-921, Korea
BMC Genomics 2011, 12:85 doi:10.1186/1471-2164-12-85
Published: 29 January 2011Additional files
Additional file 1:
The compared BAC sequence sizes and GenBank accession numbers.
Format: XLS Size: 28KB Download file
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Additional file 2:
Information about predicted genes of the compared sequences.
Format: XLS Size: 456KB Download file
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Additional file 3:
Information about duplicated genes.
Format: XLS Size: 25KB Download file
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Additional file 4:
Sequence information of the 72 intact Ty3/Gypsy-like elements.
Format: TXT Size: 735KB Download file
Additional file 5:
List of chromodomains isolated from intact pepper and tomato LTR retrotransposons.
Format: TXT Size: 4KB Download file
Additional file 6:
Information about predicted genes in the 17 tomato BAC sequences containing Tat and Athila elements.
Format: XLS Size: 73KB Download file
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Additional file 7:
Alignment of reverse transcriptases of Ty3/Gypsy-like elements.
Format: TXT Size: 75KB Download file
Additional file 8:
Alignment of reverse transcriptases isolated from intact pepper and tomato LTR retrotransposons.
Format: TXT Size: 11KB Download file
Additional file 9:
Alignment of reverse transcriptases of Ty1/Copia-like elements.
Format: TXT Size: 44KB Download file
Additional file 10:
List of PCR primers used to produce the FISH probes.
Format: XLS Size: 27KB Download file
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