Table 3

Distribution of 192 annotated transcripts (common to C and CT berries but differentially modulated during ripening) into eight clusters according to the gene expression trends.

CLUSTER 1

CLUSTER 2

CLUSTER 3

CLUSTER 4

CLUSTER 5

CLUSTER 6

CLUSTER 7

CLUSTER 8



Carbohydrate metabolic process

C

0

0

3

0

0

2

0

0


CT

0

3

0

0

0

0

2

0


Cell wall organization or biogenesis

C

0

4

6

0

0

1

0

0


CT

0

6

3

1

0

0

1

0


Cellular amino acid and derivative metabolic process

C

0

2

5

0

0

1

1

0


CT

1

5

1

1

0

0

0

1


Cellular homeostasis

C

0

2

3

0

0

1

0

0


CT

0

3

0

2

0

0

1

0


Cellular process

C

1

2

6

0

0

2

2

1


CT

0

6

1

2

0

2

2

1


Developmental process

C

0

1

4

1

0

3

0

1


CT

0

5

0

1

0

1

2

1


Generation of precursor metabolites and energy

C

0

0

27

1

0

0

0

0


CT

1

25

0

2

0

0

0

0


Hormone metabolic process

C

0

1

4

0

0

0

0

0


CT

0

4

1

0

0

0

0

0


Lipid metabolic process

C

0

2

4

0

0

1

0

1


CT

0

2

1

3

0

1

1

0


Nitrogen compound metabolic process

C

0

0

1

0

0

0

0

0


CT

0

1

0

0

0

0

0

0


Nucleic acid metabolic process

C

0

0

2

0

0

0

0

0


CT

0

2

0

0

0

0

0

0


Protein metabolic process

C

0

0

0

0

0

0

0

0


CT

0

0

0

0

0

0

0

0


Response to hormone stimulus

C

0

0

9

0

0

0

1

0


CT

0

7

0

2

0

1

0

0


Response to stress

C

0

1

7

0

0

2

4

2


CT

1

7

1

0

0

2

2

3


Secondary metabolic process

C

0

3

3

2

0

0

10

0


CT

0

4

2

2

0

9

0

1


Signal transduction

C

0

2

9

0

0

2

0

0


CT

0

8

1

2

0

0

2

0


Transcription

C

0

1

11

0

0

1

2

0


CT

0

9

0

3

0

2

1

0


Transport

C

0

3

8

3

0

3

3

1


CT

0

11

0

3

0

3

3

1


TOTAL DIFFERENTIAL MODULATED GENES per CLUSTER

C

1

24

112

7

0

19

23

6


CT

3

108

11

24

0

21

17

8


In each cluster, transcripts are divided according to their functional categories.

Pastore et al. BMC Genomics 2011 12:631   doi:10.1186/1471-2164-12-631

Open Data