Table 5

Correlation coefficients (r2) between qPCR mRNA abundance and 454 gene expression

normalization method

NDI

DI


RPKM

0.722

0.911

TMM

0.548

0.727


Correlation coefficients are derived from linear regressions between qPCR mRNA abundance and both TMM and RPKM gene expression measures from 454 read counts for each gene verified by qPCR.

Poelchau et al. BMC Genomics 2011 12:619   doi:10.1186/1471-2164-12-619

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