Table 2

Sequence features of newly inserted Alu repeats.

Sample

Chromosome coordinate

Alu subfamily

TSD

Putative cleavage site

Poly-A sequence


AI-1

chr15:61216453-61216621

AluY

AAGAAATGTTCT

TTAA

CTCAAAAAAAAAAAAAAAGAAAAAAAAAAAAGAAAAAAGAAAT


AI-2

chr5:139595078-139595241

AluYb8

TAAATTACAGA

TTAAA

CTCAAAAAAAAAAAAAAAATAAATAAATAAATAAATTA


AI-3

chr4:41598260-41598327

AluY

AAGTACATGTGG

TGGAA

CTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGT


AI-4

chr13:23662855-23663027

AluYa5

CATCTG

TTAAAA

CTCCGTCTCAAAAAAAAAAAAAACAAAAAAAAAAACAAAAAAAAAAAACATCT


AI-5

chr15:28179309-28179438

AluY

ATAAAACATGGTCTG

TATAAAA

CTCAAAAAAAAAAAAAAAATAAAAAAAAATAAATAAAAAAATAAAACAT


AI-6

chr12:32076361-32076491

AluYg6

GAAATAATTGATCT

TGAAA

CTCAAAAAAAAAAAAAAAAAAAAAGAAATAAT


AI-7

chr11:130675880-130675924

AluY

AAAAAGAAGC

TTAAAA

CTCAAAAAAAAAAAAAAAAAAAAGAAGCA


AI-8

chr5:141758572-141758694

AluYb8

AAAAATGGGGATT

TTAAAA

CTCAAAAAAAAAAAAAAAAAATGGGGA


AI-9

chr10:107891481-107891638

AluYg6

CGTGTGCTC

TTAAAA

CTCAAAAAAAAAAACGTGTG


AI-10

chr10:72605338-72605440

AluYg6

AAGAAGGTA

TAA

CTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGGT


AI-11

chr2:48276482-48276601

AluYb8

AGAAATTCAAATGCA

TTA

CTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAT


AI-12

chr5:16716576-16716677

AluYg6

AAGAAGTATGACAG

TAA

CTCAAAAAAAAAAAAAAAAAAAAGAAGTAT


AI-13

chr12:24518543-24518646

AluY

AAAAAAGTATTAATCA

TTAAAA

CTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTAT


AI-14

chr6:57403535-57403610

AluY

TCCTA

TAAT

CTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTCC


AI-15

chr2:9888790-9888862

AluYb8

CACACCCGTG

TAA

CTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACAC


AI-16

chr9:1631754-1631884

AluYb8

AAGAA

CAAA

CTCAAAAAAAAAAAAAAAAAAAAAGAAAACA


AI-17

chr4:139225139-139225274

AluY

GAGTTTTTAAACATCT

TTAAA

CTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAGT


AI-18

chr2:26623669-26623732

AluYb8

AAAATCAGTTCTTCC

TTAAAA

CTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCAGTT


AI-19

chr9:37594172-37594310

AluY

AAGAAGTAGATATGG

TAA

CTCCAAAAAAAAAAAAAAGAAG


AI-20

chr6:99872263-99872632

-

-

-

-


AI-21

chr2:145175223-145175483

-

-

-

-


de Andrade et al. BMC Genomics 2011 12:617   doi:10.1186/1471-2164-12-617

Open Data