Additional file 9.

Hierarchical tree graphs of over-represented GO terms for genes in the Green-yellowDiff module. Hierarchical tree graphs of over-represented gene ontology (GO) terms for genes in the Green-yellowDiff module were constructed using AgriGO [16]. Boxes in the graphs represent GO terms labelled by GO number, term definition and statistical information. The analysis was performed using default parameters. Significant terms are coloured (adjusted P ≤ 0.05). The degree of colour saturation of a box is positively correlated to the enrichment level of the term. Solid, dashed, and dotted lines represent two, one and zero enriched terms at both ends connected by the line, respectively. Only terms in the Biological Process GO category were significant.

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Kogelman et al. BMC Genomics 2011 12:607   doi:10.1186/1471-2164-12-607