Table 2

Statistics of functional annotation of transcripts

Annotated Proteins

# transcripts

% Total transcripts


a) Protein-coding genes

Similar to known proteins

8,834

48.57%

Conserved hypothetical proteins

6,356

34.95%

Hypothetical proteins (ORF > = 80aa)

819

4.50%

Subtotal

16,009

88.06%

b) Non-coding RNA genes

Putative long ncRNAs

2,158

11.87%

tRNA genes

5 (12)a,b

0.06%

Pseudo tRNA genes

2

0.01%

rRNA genes

6

0.03%

Subtotal

2,171 (20)a

11.94%

Total number of assembled transcripts

18,180 (18,187)a

100%


aTotal number of tRNAs including four tRNAs identified in a transcriptome assembly using a shorter k-mer size of 17 and a minimum transcript length of 100 bp.

btranscripts EFI_002280 and EFI_003197 encodes three and two tRNA genes, respectively.

Barrero et al. BMC Genomics 2011 12:600   doi:10.1186/1471-2164-12-600

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