Table 1

The most common haplotypes at the region 32.5 - 34.4 Mbp on chromosome 12 and their frequencies among cases and controls.

Haplotypes

SNP

Position

1

2

3

4

5

6

7

8


DIAS0000466

32486728

A

A

G

A

A

A

A

A

DRGA0011732

32552621

C

C

A

C

C

C

C

C

MARC0040388

32564534

G

A

G

G

G

G

A

A

ALGA0066208

32594630

G

A

G

A

A

A

A

A

ALGA0066210

32620047

C

A

A

A

A

A

A

A

ASGA0054360

32676377

A

G

G

G

G

G

A

G

ALGA0066214

32706622

A

C

C

C

C

A

A

A

ASGA0054362

32729466

A

A

A

A

A

G

G

G

MARC0016326

32762378

A

G

G

G

G

A

A

A

ALGA0066216

32843547

A

G

G

G

G

G

G

G

ALGA0116573

32936852

A

A

G

A

G

A

A

A

ALGA0066218

33179967

G

G

A

G

A

G

G

G

ALGA0066217

33236507

G

A

G

G

G

A

G

A

ASGA0097668

33738117

A

A

A

G

A

G

A

A

ASGA0103400

33776732

A

A

A

A

A

G

A

A

ALGA0066221

33825748

A

G

A

A

A

A

G

A

ALGA0066222

33852536

G

A

A

G

G

A

A

A

MARC0039239

33887438

C

C

A

C

C

A

C

C

DRGA0011741

33924664

C

A

A

C

A

A

A

A

DRGA0011742

33965584

A

A

A

A

A

A

A

G

INRA0038984

34016194

A

C

A

C

A

C

C

A

ALGA0066230

34081571

A

G

G

G

A

G

G

G

H3GA0034268

34115708

C

C

A

A

C

A

C

A

ALGA0066234

34129776

G

A

G

G

A

G

A

G

MARC0084960

34150307

G

G

A

A

G

A

G

A

H3GA0034269

34183841

G

A

A

G

G

A

A

A

ASGA0054380

34233636

G

G

A

A

A

G

G

G

H3GA0034274

34343301

C

C

C

C

A

C

C

A

ALGA0066247

34362626

G

G

G

G

G

A

G

A


Cases

18

0

0

0

0

0

0

0

Controls

25

146

129

87

78

49

47

47


Haplotype 1 is the longest haplotype that is shared by all cases in this chromosome region. The SNPs that fulfil recessive mode of inheritance in the large data set are marked in bold face.

Sironen et al. BMC Genomics 2011 12:591   doi:10.1186/1471-2164-12-591

Open Data