Additional file 2.

Supplementary material S2. Illustration of our Illumina Ref-8 (experiment 1) and HT-12 (experiments 2 & 3) BeadChips, processed in eight batches (also referred to as 'runs') corresponding to the different days on which the samples were hybridised and scanned. UHRR samples are labelled as C1-25. Replicate breast tumour clinical samples are identified with a suffix of 'a' through 'd'. The pre- and post-treatment biopsy samples are identified by a triangle to the left and right of the sample IDs, respectively.

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Kitchen et al. BMC Genomics 2011 12:589   doi:10.1186/1471-2164-12-589