Additional file 11.
Selected genes involved in gametogenesis identified in the P. hawaiensis transcriptome. Hit ID indicates if gene hits were found assembled reads (A) or singletons (S). Sequence length (range) indicates the shortest and longest A or S hit sequences for each gene. Groups of hits of a given colour indicate transcriptome sequences that mapped to the same overlapping region of the BLAST target; hits of different colours indicate transcriptome sequences that map to different, non-overlapping regions of the BLAST target. Query organism was D. melanogaster for all cases. Query sequence details: 1. S/T kinase domain was masked. 2. Dead box/Zn finger domains were masked. 3. HLH domain was masked 4. Peptidase C14 domain was masked. 5. Kinase domain masked; amino acids 175-372 used as query. 6. BTB domain used as query. 7. Kinase domain masked; amino acids 1-890 used as query. Boldface indicates genes also present in other tables (Additional Files 9, 10); asterisks indicate that genes are also present elsewhere (in a different functional category) in the same table.
Format: PDF Size: 1.9MB Download file
This file can be viewed with: Adobe Acrobat Reader
Zeng et al. BMC Genomics 2011 12:581 doi:10.1186/1471-2164-12-581