Table 2

Comparison between RNA seq [16] (24 h) and microarray data for Chlamydomonas reinhardtii cultures incubated under sulfur starvation conditions For microarray data average values for the genes during 96 h starvation are displayed (24 h, 48 h, 72 h, 96 h).

Reporter Identifier

Reporter Name

Reporter Description

Log 2 ratio microarray

Log 2 ratio RNA seq


sulfur related genes

59800

SUOX1

"sulfite oxidase"...

3.5

2.0

205505

SLT3

"sodium/sulfate co-transporter"...

-4.5

-1.8

205506

SLT2

"sodium/sulfate co-transporter"...

2.1

-1.7

205507

SLT1

"sodium/sulfate co-transporter"...

3.1

6.9

206159

SIR1

"ferredoxin-sulfite reductase"...

1.7

2.0

55757

ARS2

"periplasmic arylsulfatase"...

5.4

8.2

205501

ARS1

"periplasmic arylsulfatase"...

4.3

6.3

133924

ATS2

"ATP-sulfurylase"...

4.0

2.8

175651

OASTL1 changed to ASL1

-1.2

-0.3

137329

ECP88

"88 kDa extracellular polypeptide"...

5.6

13.4

130684

ECP76

"76 kDa extracellular polypeptide"...

5.5

10.7

photosynthetic genes

182015

PSBX

"4.1 kDa photosystem II subunit"...

-3.1

-0.9

193847

PSAO

"Photosystem I subunit O"...

-3.5

-1.4

182959

PSAH

"Subunit H of photosystem I"...

-3.1

-1.4

187195

PRPL29

"Putative chloroplast ribosomal protein L29

-7.0

-2.3

184730

LHCSR3

"Stress-related chlorophyll a/b binding protein 3"...

3.9

2.3

184731

LHCSR2

"Stress-related chlorophyll a/b binding protein 2"...

2.4

2.1

184724

LHCSR1

"stress-related chlorophyll a/b binding protein 1"...

5.5

1.8

184479

LHCBM9

"chlorophyll a-b binding protein of LHCII"...

5.8

10.0

205757

LHCBM8

"chlorophyll a-b binding protein of LHCII"...

-2.8

-0.5

184071

LHCBM7

"chlorophyll a-b binding protein of LHCII"...

-2.6

-0.9

191690

LHCBM4

"chloropyll a-b binding protein of LHCII"...

-2.9

-0.3

184397

LHCB5

"minor chlorophyll a-b binding protein of photosystem II"

-3.2

-2.0

187025

LHCA8

"light-harvesting protein of photosystem I"...

-2.9

-1.3

183363

LHCA7

"light-harvesting protein of photosystem I"...

-3.5

-1.1

186299

LHCA5

"light-harvesting protein of photosystem I"...

-3.5

-1.4

184471

LHCA1

"light-harvesting protein of photosystem I"...

-3.1

-1.3

other genes

189430

CCP1

"low-CO2-inducible chloroplast envelope protein"...

-2.5

-0.7

194325

LCI33

"low-CO2-inducible protein"...

-2.3

1.7

55019

LCI1

"low-CO2-inducible membrane protein"...

-2.1

-2.9

97127

EFG1

"chloroplast elongation factor G"...

-2.9

-0.6

135322

CSP41b

"chloroplast stem-loop-binding protein"...

-2.5

0.4

205573

CSP41a

"chloroplast stem-loop-binding protein"...

-2.2

0.0

141844

CDJ4

"chloroplast DnaJ-like protein"...

2.6

0.8

134235

ATPC

"chloroplast ATP synthase gamma chain"...

-2.4

-0.4

81427

81427/1

"Chloroplast SRP54 Subunit of Signal Recognition Particle"...

2.2

-1.7

174103

IPY3

"soluble inorganic pyrophosphatase"...

-2.3

-2.8

148916

ELI3

"Early light-inducible protein"...

2.0

2.9


Toepel et al. BMC Genomics 2011 12:579   doi:10.1186/1471-2164-12-579

Open Data