Additional file 1.

Figure S1. Localization of proteins and DNA elements around 13 interband regions of cell lines chromosomes. Top: molecular and genetic maps (20 kb) of these regions are centered at positions (solid vertical lines) of reference transposons (triangles) that were used for cytological identification and cloning the DNA around reference transposons in interbands. Exact molecular coordinates of transposon insertions are given in Additional File 2 Table S1. Horizontal arrows denote positions and orientation of known genes (FlyBase Genes r. 5.12). Vertical red arrows correspond to P-transposon integration sites referenced in FlyBase (when insertion sites were too close, their number is indicated above the arrow). For the region 3C6/C7, P-element integration regions lacking precise molecular localization are denoted by horizontal lines; faswb deletion is shown as square brackets. Bottom: data on the densities of nucleosomes, distributions of 9 chromatin states and binding sites for chromatin proteins in S2 cell line as presented on the modENCODE website [48], as well as distributions of histone H1 depleted regions (H1-dips) according to [40], the five-colored chromatin types [35] and binding sites for ORC proteins according to [52] in Kc167 cell line. Regions most likely corresponding to interbands are delimited by vertical dashed lines.

Format: PDF Size: 17.9MB Download file

This file can be viewed with: Adobe Acrobat Reader

Demakov et al. BMC Genomics 2011 12:566   doi:10.1186/1471-2164-12-566