Table 4

Alu subfamilies in human genome (hg18) with HNF4α binding sites.

Alu

# with H4

# in hg18

%


AluYa5

3776

3851

98.05

AluYf5

173

178

97.19

AluY

112,814

118,382

95.30

AluYk4

1720

1831

93.94

AluSg

37,876

40,751

92.94

AluYb9

296

323

91.64

AluYb8

2526

2811

89.86

AluSc

30,426

33,886

89.79

AluSg7

7268

8207

88.56

AluSc8

19,011

21,491

88.46

AluSg4

6493

7347

88.38

AluYc3

492

566

86.93

AluSc5

5709

6766

84.38

AluYf4

1128

1353

83.37

AluSx3

23,542

28,952

81.31

AluSp

39,357

49,055

80.23

AluSx4

4499

5658

79.52

AluSq4

1086

1393

77.96

AluSq2

41,871

54,418

76.94

AluSq

16,472

21,472

76.71

AluYd8

167

221

75.57


Bolotin et al. BMC Genomics 2011 12:560   doi:10.1186/1471-2164-12-560

Open Data