Table 6 |
||||||||
|
Summary of CNVs |
||||||||
|
BTA |
Chromosome length |
% length in CNV |
Total CNV length |
No. CNV |
Mean length |
Median length |
Max length |
Min length |
|
|
||||||||
|
1 |
161,106,243 |
0.028 |
44,913 |
11 |
4,083 |
4,148 |
7,151 |
2,861 |
|
|
||||||||
|
2 |
140,800,416 |
0.102 |
143,068 |
32 |
4,471 |
4,865 |
10,257 |
2,629 |
|
|
||||||||
|
3 |
127,923,604 |
0.135 |
173,057 |
27 |
6,410 |
5,435 |
28,029 |
2,861 |
|
|
||||||||
|
4 |
124,454,208 |
0.000 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
||||||||
|
5 |
125,847,759 |
0.246 |
309,452 |
51 |
6,068 |
6,435 |
19,448 |
2,860 |
|
|
||||||||
|
6 |
122,561,022 |
0.292 |
358,280 |
56 |
6,398 |
5,610 |
20,911 |
2,549 |
|
|
||||||||
|
7 |
112,078,216 |
0.243 |
272,175 |
95 |
2,865 |
3,421 |
9,881 |
1,901 |
|
|
||||||||
|
8 |
116,942,821 |
0.163 |
190,373 |
37 |
5,145 |
5,131 |
13,111 |
2,849 |
|
|
||||||||
|
9 |
108,145,351 |
0.057 |
61,772 |
14 |
4,412 |
3,949 |
7,051 |
2,821 |
|
|
||||||||
|
10 |
106,383,598 |
0.090 |
96,123 |
25 |
3,845 |
3,727 |
8,481 |
2,569 |
|
|
||||||||
|
11 |
110,171,769 |
0.075 |
82,123 |
31 |
2,649 |
2,813 |
4,499 |
2,249 |
|
|
||||||||
|
12 |
85,358,539 |
0.255 |
217,445 |
49 |
4,438 |
5,005 |
9,731 |
2,781 |
|
|
||||||||
|
13 |
84,419,198 |
0.180 |
152,086 |
64 |
2,376 |
2,758 |
3,939 |
1,969 |
|
|
||||||||
|
14 |
81,345,643 |
0.113 |
91,924 |
26 |
3,536 |
3,752 |
5,628 |
2,680 |
|
|
||||||||
|
15 |
84,633,453 |
0.125 |
106,076 |
30 |
3,536 |
3,611 |
10,209 |
2,489 |
|
|
||||||||
|
16 |
77,906,053 |
0.039 |
30,688 |
6 |
5,115 |
3,562 |
14,248 |
2,740 |
|
|
||||||||
|
17 |
76,506,943 |
0.048 |
36,720 |
11 |
3,338 |
3,510 |
6,480 |
2,700 |
|
|
||||||||
|
18 |
66,141,439 |
0.851 |
563,154 |
120 |
4,693 |
6,100 |
18,405 |
2,141 |
|
|
||||||||
|
19 |
65,312,493 |
0.035 |
22,660 |
6 |
3,777 |
2,987 |
6,723 |
2,489 |
|
|
||||||||
|
20 |
75,796,353 |
0.036 |
27,332 |
8 |
3,416 |
3,589 |
4,141 |
2,761 |
|
|
||||||||
|
21 |
69,173,390 |
0.064 |
44,293 |
13 |
3,407 |
3,568 |
5,413 |
2,461 |
|
|
||||||||
|
22 |
61,848,140 |
0.031 |
19,408 |
4 |
4,852 |
4,033 |
8,821 |
2,521 |
|
|
||||||||
|
23 |
53,376,148 |
0.095 |
50,750 |
12 |
4,229 |
3,500 |
12,000 |
2,500 |
|
|
||||||||
|
24 |
65,020,233 |
0.053 |
34,298 |
10 |
3,430 |
3,307 |
5,389 |
2,449 |
|
|
||||||||
|
25 |
44,060,403 |
0.000 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
||||||||
|
26 |
51,750,746 |
0.134 |
69,401 |
33 |
2,103 |
2,301 |
2,761 |
1,841 |
|
|
||||||||
|
27 |
48,749,334 |
0.144 |
70,250 |
14 |
5,018 |
4,126 |
20,071 |
2,231 |
|
|
||||||||
|
28 |
46,084,206 |
0.045 |
20,587 |
5 |
4,117 |
3,943 |
5,913 |
2,409 |
|
|
||||||||
|
29 |
51,998,940 |
0.000 |
0 |
0 |
0 |
0 |
0 |
0 |
|
|
||||||||
|
TOTAL |
2,545,896,661 |
0.129 |
3,288,408 |
790 |
4,163 |
3,171 |
28,029 |
1,841 |
|
|
||||||||
|
The distribution and size characteristics of CNVs detected through comparison of the Holstein and Black Angus read sets mapped to the Btau4.0 reference assembly. |
||||||||
|
Stothard et al. BMC Genomics 2011 12:559 doi:10.1186/1471-2164-12-559 |
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