Table 6

Summary of CNVs

BTA

Chromosome length

% length in CNV

Total CNV length

No. CNV

Mean length

Median length

Max length

Min length


1

161,106,243

0.028

44,913

11

4,083

4,148

7,151

2,861


2

140,800,416

0.102

143,068

32

4,471

4,865

10,257

2,629


3

127,923,604

0.135

173,057

27

6,410

5,435

28,029

2,861


4

124,454,208

0.000

0

0

0

0

0

0


5

125,847,759

0.246

309,452

51

6,068

6,435

19,448

2,860


6

122,561,022

0.292

358,280

56

6,398

5,610

20,911

2,549


7

112,078,216

0.243

272,175

95

2,865

3,421

9,881

1,901


8

116,942,821

0.163

190,373

37

5,145

5,131

13,111

2,849


9

108,145,351

0.057

61,772

14

4,412

3,949

7,051

2,821


10

106,383,598

0.090

96,123

25

3,845

3,727

8,481

2,569


11

110,171,769

0.075

82,123

31

2,649

2,813

4,499

2,249


12

85,358,539

0.255

217,445

49

4,438

5,005

9,731

2,781


13

84,419,198

0.180

152,086

64

2,376

2,758

3,939

1,969


14

81,345,643

0.113

91,924

26

3,536

3,752

5,628

2,680


15

84,633,453

0.125

106,076

30

3,536

3,611

10,209

2,489


16

77,906,053

0.039

30,688

6

5,115

3,562

14,248

2,740


17

76,506,943

0.048

36,720

11

3,338

3,510

6,480

2,700


18

66,141,439

0.851

563,154

120

4,693

6,100

18,405

2,141


19

65,312,493

0.035

22,660

6

3,777

2,987

6,723

2,489


20

75,796,353

0.036

27,332

8

3,416

3,589

4,141

2,761


21

69,173,390

0.064

44,293

13

3,407

3,568

5,413

2,461


22

61,848,140

0.031

19,408

4

4,852

4,033

8,821

2,521


23

53,376,148

0.095

50,750

12

4,229

3,500

12,000

2,500


24

65,020,233

0.053

34,298

10

3,430

3,307

5,389

2,449


25

44,060,403

0.000

0

0

0

0

0

0


26

51,750,746

0.134

69,401

33

2,103

2,301

2,761

1,841


27

48,749,334

0.144

70,250

14

5,018

4,126

20,071

2,231


28

46,084,206

0.045

20,587

5

4,117

3,943

5,913

2,409


29

51,998,940

0.000

0

0

0

0

0

0


TOTAL

2,545,896,661

0.129

3,288,408

790

4,163

3,171

28,029

1,841


The distribution and size characteristics of CNVs detected through comparison of the Holstein and Black Angus read sets mapped to the Btau4.0 reference assembly.

Stothard et al. BMC Genomics 2011 12:559   doi:10.1186/1471-2164-12-559

Open Data