Open Access Highly Accessed Research article

Whole genome resequencing of black Angus and Holstein cattle for SNP and CNV discovery

Paul Stothard, Jung-Woo Choi, Urmila Basu, Jennifer M Sumner-Thomson, Yan Meng, Xiaoping Liao and Stephen S Moore*

Author Affiliations

Department of Agricultural, Food and Nutritional Science, University of Alberta, Edmonton, AB T6G 2P5, Canada

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BMC Genomics 2011, 12:559  doi:10.1186/1471-2164-12-559

Published: 15 November 2011

Additional files

Additional file 1:

Annotated Holstein SNPs. Tab-delimited text file of Holstein SNPs identified and annotated in this work. Intergenic and intronic SNPs were removed to reduce the size of the file.

Format: ZIP Size: 6.7MB Download file

Open Data

Additional file 2:

Annotated Black Angus SNPs. Tab-delimited text file of Black Angus SNPs identified and annotated in this work. Intergenic and intronic SNPs were removed to reduce the size of the file.

Format: ZIP Size: 6.2MB Download file

Open Data

Additional file 3:

CNV details. Tab-delimited text file describing CNVs detected in this work.

Format: TXT Size: 65KB Download file

Open Data

Additional file 4:

SNP annotation fields. PDF file containing a table of SNP annotation column descriptions.

Format: PDF Size: 64KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 5:

CNV validation primers and probes. PDF file containing a table of CNV validation primers and probes.

Format: PDF Size: 64KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data