Table 4

SNP annotation

Fixed

Segregating


Large White

Iberian

Large White

Iberian


Synonymous coding

2083

1727

1352

757


Non synonymous coding

1073

910

852

494


5' UTR

150

77

73

39


3' UTR

1187

1029

1004

622


Stop lost

3

1

0

4


Stop gained

1

3

7

9


Intronic

15101

13020

3388

2515


5'Upstream

2983

2588

1176

628


3'Downstream

9440

8549

5579

3831


Splice site

311

259

91

86


Non synonymous coding

1073

910

852

494


Within non coding gene

262

268

14

9


Intergenic

5847

5042

1539

1076


The number of SNP is degenerated; each SNP can have more than one annotation.

Esteve-Codina et al. BMC Genomics 2011 12:552   doi:10.1186/1471-2164-12-552

Open Data