Figure 7.

Fold-change (FC) distribution. Log2-transformed FC were calculated with DEGseq and plotted for each class of effect. (A) Genotype effect: contigs overexpressed in genotype G1 are presented with positive values (+), whereas contigs underexpressed in genotype G1 have negative values (-). Similarly, (B) treatment effects: overexpressed in IR (+) and under expressed in IR (-); (C) genotype × treatment effect for genotype G1: IR (+) and NI (-); (D) genotype × treatment effect for genotype G2: overexpressed in IR (+) and underexpressed in IR (-); (E) genotype × treatment effect for treatment IR: overexpressed for G1 (+) and underexpressed for G1 (-); (F) genotype × treatment effect for treatment NI: overexpressed for G1 (+) and underexpressed for G1 (-). The number of contigs overexpressed is shown in brackets.

Villar et al. BMC Genomics 2011 12:538   doi:10.1186/1471-2164-12-538
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