Table 2

Similarity of predicted Helicobacter bizzozeronii CIII-1 proteins to proteins from other taxa

Taxon

Best match

Within best

5 matches

#

%

%


Proteobacteria

1,817

95.53

91.55

Epsilon

1,791

94.16

87.55

Helicobacteraceae

1,733

91.11

81.74

Helicobacter felis

937

49.26

19.09

Helicobacter suis

690

36.28

17.10

Helicobacter pylori

51

2.68

33.04

Helicobacter mustelae

12

0.63

1.90

Helicobacter cinaedi

8

0.42

1.67

Helicobacter hepaticus

8

0.42

1.67

Helicobacter bilis

8

0.42

1.25

Helicobacter acinonychis str. Sheeba

5

0.26

2.92

Helicobacter winghamensis

5

0.26

0.46

Candidatus Helicobacter heilmannii

3

0.16

0.06

Wolinella succinogenes

2

0.11

0.79

Helicobacter cetorum

2

0.11

0.17

Helicobacter canadensis

1

0.05

0.63

Helicobacter pullorum

1

0.05

0.63

Sulfuricurvum kujiense

0

0.00

0.16

Sulfurimonas autotrophica

0

0.00

0.09

Sulfurimonas denitrificans

0

0.00

0.08

Helicobacter salomonis

0

0.00

0.01

Campylobacteraceae

54

2.84

5.18

Campylobacter rectus

16

0.84

0.38

Campylobacter jejuni

11

0.58

1.49

Campylobacter upsaliensis

9

0.47

0.77

Campylobacter concisus

6

0.32

0.24

Campylobacter coli

5

0.26

0.28

Campylobacter fetus

4

0.21

0.41

Campylobacter curvus

2

0.11

0.29

Campylobacter gracilis

1

0.05

0.12

Sulfurospirillum sp.

0

0.00

0.30

Arcobacter butzleri

0

0.00

0.27

Arcobacter nitrofigilis

0

0.00

0.21

Campylobacter showae

0

0.00

0.20

Campylobacter lari

0

0.00

0.18

Campylobacter hominis

0

0.00

0.03

Unclassified

3

0.16

0.39

Nautiliaceae

1

0.05

0.24

Alpha

4

0.21

0.49

Beta

4

0.21

0.78

Burkholderiales

4

0.21

0.58

Others

0

0.00

0.20

Gamma

18

0.95

2.50

Aeromonadales

5

0.26

0.26

Pasteurellales

4

0.21

0.47

Enterobacteriales

2

0.11

0.45

Pseudomonadales

1

0.05

0.39

Cardiobacteriales

1

0.05

0.25

Vibrionales

1

0.05

0.16

Xanthomonadales

1

0.05

0.14

Oceanospirillales

1

0.05

0.11

Chromatiales

1

0.05

0.05

Thiotrichales

0

0.00

0.08

Legionellales

0

0.00

0.02

Others

1

0.05

0.12

Delta

0

0.00

0.22

Firmicutes

30

1.58

2.80

Clostridiales

15

0.79

1.34

Bacillales

11

0.58

0.52

Lactobacillales

2

0.11

0.48

Selenomonadales

1

0.05

0.24

Erysipelotrichales

1

0.05

0.16

Thermoanaerobacterales

0

0.00

0.06

Bacteroidetes/Chlorobi

12

0.63

1.01

Bacteroidales

5

0.26

0.42

Flavobacteriales

3

0.16

0.25

Sphingobacteriales

2

0.11

0.08

Unclassified

1

0.05

0.16

Chlorobiales

1

0.05

0.03

Cytophagales

0

0.00

0.06

Spirochaetes

7

0.37

0.77

Chloroflexi

3

0.16

0.08

Fusobacteria

2

0.11

0.59

Archaea

2

0.11

0.18

Actinobacteria

1

0.05

0.37

Fibrobacteres/Acidobacteria

1

0.05

0.16

Cyanobacteria

1

0.05

0.13

Aquificae

1

0.05

0.05

Deferribacteres

1

0.05

0.04

Tenericutes

1

0.05

0.04

Planctomycetes

0

0.00

0.06

Deinococcus-Thermus

0

0.00

0.05

Chlamydiae/Verrucomicrobia

0

0.00

0.02

Synergistetes

0

0.00

0.09

Thermotogae

0

0.00

0.05

Nitrospirae

0

0.00

0.01

Phage/Plasmid/Virus

6

0.32

0.49

Eukaryota

17

0.89

1.45


Schott et al. BMC Genomics 2011 12:534   doi:10.1186/1471-2164-12-534

Open Data