Table 2 |
|||
|
Similarity of predicted Helicobacter bizzozeronii CIII-1 proteins to proteins from other taxa |
|||
|
Taxon |
Best match |
Within best 5 matches |
|
|
# |
% |
% |
|
|
|
|||
|
Proteobacteria |
1,817 |
95.53 |
91.55 |
|
Epsilon |
1,791 |
94.16 |
87.55 |
|
Helicobacteraceae |
1,733 |
91.11 |
81.74 |
|
Helicobacter felis |
937 |
49.26 |
19.09 |
|
Helicobacter suis |
690 |
36.28 |
17.10 |
|
Helicobacter pylori |
51 |
2.68 |
33.04 |
|
Helicobacter mustelae |
12 |
0.63 |
1.90 |
|
Helicobacter cinaedi |
8 |
0.42 |
1.67 |
|
Helicobacter hepaticus |
8 |
0.42 |
1.67 |
|
Helicobacter bilis |
8 |
0.42 |
1.25 |
|
Helicobacter acinonychis str. Sheeba |
5 |
0.26 |
2.92 |
|
Helicobacter winghamensis |
5 |
0.26 |
0.46 |
|
Candidatus Helicobacter heilmannii |
3 |
0.16 |
0.06 |
|
Wolinella succinogenes |
2 |
0.11 |
0.79 |
|
Helicobacter cetorum |
2 |
0.11 |
0.17 |
|
Helicobacter canadensis |
1 |
0.05 |
0.63 |
|
Helicobacter pullorum |
1 |
0.05 |
0.63 |
|
Sulfuricurvum kujiense |
0 |
0.00 |
0.16 |
|
Sulfurimonas autotrophica |
0 |
0.00 |
0.09 |
|
Sulfurimonas denitrificans |
0 |
0.00 |
0.08 |
|
Helicobacter salomonis |
0 |
0.00 |
0.01 |
|
Campylobacteraceae |
54 |
2.84 |
5.18 |
|
Campylobacter rectus |
16 |
0.84 |
0.38 |
|
Campylobacter jejuni |
11 |
0.58 |
1.49 |
|
Campylobacter upsaliensis |
9 |
0.47 |
0.77 |
|
Campylobacter concisus |
6 |
0.32 |
0.24 |
|
Campylobacter coli |
5 |
0.26 |
0.28 |
|
Campylobacter fetus |
4 |
0.21 |
0.41 |
|
Campylobacter curvus |
2 |
0.11 |
0.29 |
|
Campylobacter gracilis |
1 |
0.05 |
0.12 |
|
Sulfurospirillum sp. |
0 |
0.00 |
0.30 |
|
Arcobacter butzleri |
0 |
0.00 |
0.27 |
|
Arcobacter nitrofigilis |
0 |
0.00 |
0.21 |
|
Campylobacter showae |
0 |
0.00 |
0.20 |
|
Campylobacter lari |
0 |
0.00 |
0.18 |
|
Campylobacter hominis |
0 |
0.00 |
0.03 |
|
Unclassified |
3 |
0.16 |
0.39 |
|
Nautiliaceae |
1 |
0.05 |
0.24 |
|
Alpha |
4 |
0.21 |
0.49 |
|
Beta |
4 |
0.21 |
0.78 |
|
Burkholderiales |
4 |
0.21 |
0.58 |
|
Others |
0 |
0.00 |
0.20 |
|
Gamma |
18 |
0.95 |
2.50 |
|
Aeromonadales |
5 |
0.26 |
0.26 |
|
Pasteurellales |
4 |
0.21 |
0.47 |
|
Enterobacteriales |
2 |
0.11 |
0.45 |
|
Pseudomonadales |
1 |
0.05 |
0.39 |
|
Cardiobacteriales |
1 |
0.05 |
0.25 |
|
Vibrionales |
1 |
0.05 |
0.16 |
|
Xanthomonadales |
1 |
0.05 |
0.14 |
|
Oceanospirillales |
1 |
0.05 |
0.11 |
|
Chromatiales |
1 |
0.05 |
0.05 |
|
Thiotrichales |
0 |
0.00 |
0.08 |
|
Legionellales |
0 |
0.00 |
0.02 |
|
Others |
1 |
0.05 |
0.12 |
|
Delta |
0 |
0.00 |
0.22 |
|
Firmicutes |
30 |
1.58 |
2.80 |
|
Clostridiales |
15 |
0.79 |
1.34 |
|
Bacillales |
11 |
0.58 |
0.52 |
|
Lactobacillales |
2 |
0.11 |
0.48 |
|
Selenomonadales |
1 |
0.05 |
0.24 |
|
Erysipelotrichales |
1 |
0.05 |
0.16 |
|
Thermoanaerobacterales |
0 |
0.00 |
0.06 |
|
Bacteroidetes/Chlorobi |
12 |
0.63 |
1.01 |
|
Bacteroidales |
5 |
0.26 |
0.42 |
|
Flavobacteriales |
3 |
0.16 |
0.25 |
|
Sphingobacteriales |
2 |
0.11 |
0.08 |
|
Unclassified |
1 |
0.05 |
0.16 |
|
Chlorobiales |
1 |
0.05 |
0.03 |
|
Cytophagales |
0 |
0.00 |
0.06 |
|
Spirochaetes |
7 |
0.37 |
0.77 |
|
Chloroflexi |
3 |
0.16 |
0.08 |
|
Fusobacteria |
2 |
0.11 |
0.59 |
|
Archaea |
2 |
0.11 |
0.18 |
|
Actinobacteria |
1 |
0.05 |
0.37 |
|
Fibrobacteres/Acidobacteria |
1 |
0.05 |
0.16 |
|
Cyanobacteria |
1 |
0.05 |
0.13 |
|
Aquificae |
1 |
0.05 |
0.05 |
|
Deferribacteres |
1 |
0.05 |
0.04 |
|
Tenericutes |
1 |
0.05 |
0.04 |
|
Planctomycetes |
0 |
0.00 |
0.06 |
|
Deinococcus-Thermus |
0 |
0.00 |
0.05 |
|
Chlamydiae/Verrucomicrobia |
0 |
0.00 |
0.02 |
|
Synergistetes |
0 |
0.00 |
0.09 |
|
Thermotogae |
0 |
0.00 |
0.05 |
|
Nitrospirae |
0 |
0.00 |
0.01 |
|
Phage/Plasmid/Virus |
6 |
0.32 |
0.49 |
|
Eukaryota |
17 |
0.89 |
1.45 |
|
|
|||
|
Schott et al. BMC Genomics 2011 12:534 doi:10.1186/1471-2164-12-534 |
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