Table 3

Lateral genetic transfer of global regulators within the E. coli - Shigella clade using an alternative definition of 'global regulator'.

TF name

Gene coding for the TF

Blattner number

Number of target genes

Is the corresponding protein tree concordant or discordant with the E. coli - Shigella MRP tree?

Evidence for internal recombination breakpoint(s)?


CRP

crp

b3357

435

Concordant

No

FNR

fnr

b1334

282

Concordant

No

Fis

fis

b3261

225

Concordant

No

IHF

ihfA

b1712

217

Concordant

No

IHF

ihfB

b0912

217

Discordant

No

ArcA

arcA

b4401

158

Concordant

No

H-NS

hns

b1237

144

Concordant

No

Lrp

lrp

b0889

97

Concordant

No

NarL

narL

b1221

114

Concordant

No

Fur

fur

b0683

85

Concordant

No

CpxR

cpxR

b3912

56

Concordant

No

PhoB

phoB

b0399

37

Concordant

No

PurR

purR

b1658

31

Concordant

No

Rob

rob

b4396

18

Concordant

No

DgsA (Mlc)

dgsA

b1594

10

Discordant

No

CspA

cspA

b3556

3

Concordant

No

SoxR

soxR

b4063

3

Discordant

No


Definition of a global regulator as given in [2].

Skippington and Ragan BMC Genomics 2011 12:532   doi:10.1186/1471-2164-12-532

Open Data