Table 4

Summary of contig assignments to KEGG pathways associated with amino acid biosynthesis and metabolism

KEGG ID

Kegg pathway

No. of contigs


00250

Alanine, aspartate and glutamate metabolism

8

00260

Glycine, serine and threonine metabolism

11

00270

Cysteine and methionine metabolism

8

00280

Valine, leucine and isoleucine degradation

12

00290

Valine, leucine and isoleucine biosynthesis

3

00300

Lysine biosynthesis

4

00310

Lysine degradation

6

00330

Arginine and proline metabolism

7

00340

Histidine metabolism

2

00350

Tyrosine metabolism

3

00360

Phenylalanine metabolism

4

00380

Tryptophan metabolism

7

00400

Phenylalanine, tyrosine and tryptophan biosynthesis

4

00410

Beta-Alanine metabolism

6

00430

Taurine and hypotaurine metabolism

2

00440

Phosphonate and phosphinate metabolism

0

00450

Selenoamino acid metabolism

3

00460

Cyanoamino acid metabolism

2

00471

D-Glutamine and D-glutamate metabolism

0

00472

D-Arginine and D-ornithine metabolism

0

00473

D-Alanine metabolism

0

00480

Glutathione metabolism

8


A complete list of assignments, and identifications are included in Additional file 4.

Lowe et al. BMC Genomics 2011 12:519   doi:10.1186/1471-2164-12-519

Open Data