Open Access Research article

The transcriptome of the novel dinoflagellate Oxyrrhis marina (Alveolata: Dinophyceae): response to salinity examined by 454 sequencing

Chris D Lowe*, Luciane V Mello, Najma Samatar, Laura E Martin, David JS Montagnes and Phillip C Watts

Author Affiliations

Department of Evolution, Ecology, and Behaviour, Institute of Integrative Biology, University of Liverpool, Biosciences Building, Crown Street, Liverpool, L69 7ZB, UK

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BMC Genomics 2011, 12:519  doi:10.1186/1471-2164-12-519

Published: 20 October 2011

Additional files

Additional file 1:

Oxyrrhis marina 454 contigs. Text file containing 7, 398 fasta-formatted sequences generated by Newbler (Roche 454) assembly.

Format: FNA Size: 2.2MB Download file

Open Data

Additional file 2:

supplementary information for the BLAST identification of Oxyrrhis marina transcripts. This file (.doc) contains summary tables of the longest contigs (Table S1) and the most abundant contigs (Table S2) and corresponding identifications (assigned by BLAST identity). Table S3 provides a summary of the ribosomal protein encoding genes present in the dataset.

Format: DOC Size: 157KB Download file

This file can be viewed with: Microsoft Word Viewer

Open Data

Additional file 3:

supplementary information for GO annotation of the Oxyrrhis marina transcripts. This file (.doc) contains summaries of annotations for GO biological processes level 3 (Figure S1) and GO cellular component level 3 (Figure S2).

Format: DOC Size: 60KB Download file

This file can be viewed with: Microsoft Word Viewer

Open Data

Additional file 4:

supplementary information for contigs associated with KEGG amino acid synthesis pathways. Data file (.csv) containing a summary of contigs associated with amino acid synthesis and a contig identification based on KEGG orthology.

Format: CSV Size: 9KB Download file

Open Data