Table 3

Statistics of watermelon unigenes with sequence matches against public protein databases

Database

E value

Contig

Singleton

Total


NCBI nr

1e-5

29,550 (67.9%)

11,695 (37.1%)

41,245 (54.9%)

1e-20

16,496 (37.9%)

4,152 (13.2%)

20,648 (27.5%)

1e-50

3,933 (9%)

460 (1.5%)

4,393 (5.9%)


cucumber protein

1e-5

33,708 (77.4%)

15,716 (49.9%)

49,424 (65.8%)

1e-20

23,692 (54.4%)

7,672 (24.3%)

31,364 (41.8%)

1e-50

7,969 (18.3)

1,241 (3.9%)

9,210 (12.3%)


Arabidopsis protein

1e-5

29,409 (67.5%)

11,925 (37.8%)

41,334 (55.1%)

1e-20

17,433 (40%)

4,501 (14.3%)

21,934 (29.2%)

1e-50

4,516 (10.4%)

473 (1.5%)

4,989 (6.6%)


rice protein

1e-5

28,107 (64.5%)

10,843 (34.4%)

38,950 (51.9%)

1e-20

15,769 (36.2%)

3,833 (12.2%)

19,602 (26.1%)

1e-50

3,944 (9.1%)

336 (1.1%)

4,280 (5.7%)


Note: percentages of contigs, singletons and total unigenes were calculated from total numbers of contigs (43,544), singletons (31,524) and unigenes (75,068), respectively.

Guo et al. BMC Genomics 2011 12:454   doi:10.1186/1471-2164-12-454

Open Data