Research article
Genomic insights into an obligate epibiotic bacterial predator: Micavibrio aeruginosavorus ARL-13
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* Corresponding author: Martin Wu mw4yv@virginia.edu
1 Department of Biology, University of Virginia, 485 McCormick Road, Charlottesville, Virginia 22903, USA
2 Department of Oral Biology, University of Medicine and Dentistry of New Jersey, Newark, New Jersey 07101, USA
BMC Genomics 2011, 12:453 doi:10.1186/1471-2164-12-453
Published: 21 September 2011Additional files
Additional file 1:
Comparison of major metabolic pathways between Micavibrio aeruginosavorus, Bdellovibrio bacteriovorus and Escherichia coli. A word file listing the number of genes identified in each pathway with the percentage of the genome in parentheses.
Format: DOC Size: 40KB Download file
This file can be viewed with: Microsoft Word Viewer
Additional file 2:
Hydrolytic Enzymes encoded by M. aeruginosavorus. A word file listing hydrolytic enzymes identified in M. aeruginosavorus genome and their predicted locations by pSort.
Format: DOC Size: 45KB Download file
This file can be viewed with: Microsoft Word Viewer
Additional file 3:
Flagellum biosynthesis and chemotaxis genes of M. aeruginosavorus. A word file listing genes involved in flagellum biosynthesis and chemotaxis.
Format: DOC Size: 48KB Download file
This file can be viewed with: Microsoft Word Viewer
Additional file 4:
Gene expression index (GEI) derived from RNA-Seq. A excel file listing the gene expression index for all ORFs of M. aeruginosavorus in the attachment and the attack phases.
Format: XLS Size: 411KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional file 5:
Genomic islands in M. aeruginosavorus ARL-13. A word file listing the genomic islands and their locations, sizes and the genes of interest.
Format: DOC Size: 30KB Download file
This file can be viewed with: Microsoft Word Viewer
Additional file 6:
Correlation between qRT-PCR and RNA-Seq. An image file in PNG format showing the correlation between qRT-PCR and RNA-Seq data for selected genes in the Micavibrio attachment sample. Genes were selected to represent a broad range of gene expression levels. They were: GMV0043 (porin), GMV0092, GM0093, GMV0107 (hemolysin-related proteins), GMV1700 (flagellar hook-basal body complex FliE family), GMV2023 (bacterial regulatory tetR family protein) and GMV2138 (ribosomal protein S7).
Format: PNG Size: 27KB Download file
