Table 2

Comparison of NUMT and NUPT content between grapevine whole-genome and segmentally duplicated regions

Whole chromosome

Segmental duplications


chr

NUMTs

NUPTs

NUMTs

NUPTs


bp

percentage

bp

percentage

bp

percentage

bp

percentage


chr1

35,148

0.15%

31,915

0.14%

7,942

0.29%

2,216

0.08%

chr2

23,352

0.12%

37,460

0.20%

5,029

0.17%

16,919

0.56%

chr3

46,530

0.24%

21,546

0.11%

3,746

0.10%

1,888

0.05%

chr4

40,855

0.17%

26,304

0.11%

8,651

0.26%

2,803

0.08%

chr5

36,974

0.15%

25,890

0.10%

6,936

0.19%

2,263

0.06%

chr6

42,918

0.20%

35,543

0.17%

14,186

0.50%

10,820

0.38%

chr7

29,780

0.14%

29,239

0.14%

1,282

0.05%

2,409

0.10%

chr8

52,538

0.23%

38,971

0.17%

16,355

0.81%

10,005

0.49%

chr9

40,017

0.17%

41,931

0.18%

12,529

0.22%

13,459

0.24%

chr10

40,034

0.22%

29,263

0.16%

6,255

0.18%

9,896

0.29%

chr11

32,762

0.17%

40,550

0.20%

8,227

0.38%

8,354

0.39%

chr12

79,290

0.35%

42,133

0.19%

46,728

1.07%

11,608

0.27%

chr13

59,784

0.25%

40,806

0.17%

22,390

0.49%

12,465

0.27%

chr14

59,292

0.20%

32,831

0.11%

12,094

0.27%

5,976

0.13%

chr15

25,964

0.13%

25,086

0.12%

5,899

0.13%

4,076

0.09%

chr16

55,547

0.25%

41,895

0.19%

21,245

0.38%

10,531

0.19%

chr17

26,574

0.16%

28,029

0.16%

3,702

0.15%

2,812

0.11%

chr18

60,444

0.21%

40,038

0.14%

22,523

0.49%

8,360

0.18%

chr19

39,838

0.17%

30,991

0.13%

12,876

0.22%

6,879

0.12%

Tot_nonrandom

827,641

0.19%

640,421

0.15%

238,595

0.33%

143,739

0.20%

chr1_random

1,763

0.31%

2,762

0.49%

78

0.06%

33

0.02%

chr3_random

872

0.07%

1,082

0.09%

0

0.00%

0

0.00%

chr4_random

0

0.00%

0

0.00%

-

-

-

-

chr5_random

642

0.15%

366

0.09%

-

-

-

-

chr7_random

2,355

0.16%

2,195

0.15%

352

0.25%

55

0.04%

chr9_random

525

0.11%

81

0.02%

93

0.07%

0

0.00%

chr10_random

111

0.01%

1,096

0.14%

0

0.00%

0

0.00%

chr11_random

667

0.24%

191

0.07%

-

-

-

-

chr12_random

1,522

0.10%

2,588

0.17%

674

0.17%

1,756

0.43%

chr13_random

8,607

0.26%

5,168

0.16%

4,914

0.46%

2,903

0.27%

chr16_random

636

0.09%

977

0.13%

636

0.09%

977

0.15%

chr17_random

94

0.01%

770

0.09%

0

0.00%

0

0.00%

chr18_random

5,302

0.10%

3,476

0.07%

2,709

0.20%

509

0.04%

Tot_random

23,096

0.14%

20,752

0.12%

9,456

0.20%

6,233

0.13%

Tot_placed

850,737

0.19%

661,173

0.15%

248,051

0.33%

149,972

0.20%

chrUn

417,301

0.97%

69,457

0.16%

159,039

1.79%

21,834

0.25%

Tot_whole

1,268,038

0.26%

730,630

0.15%

407,090

0.48%

171,806

0.20%


Giannuzzi et al. BMC Genomics 2011 12:436   doi:10.1186/1471-2164-12-436

Open Data