Table 1

Segmental duplications in the grapevine genome

chr

chr_size (bp)

dup_size (bp)

perc_dup

# dup intervals


chr1

23,037,639

2,733,492

11.87%

94

chr2

18,779,844

3,032,687

16.15%

104

chr3

19,341,862

3,860,663

19.96%

132

chr4

23,867,706

3,301,331

13.83%

118

chr5

25,021,643

3,688,952

14.74%

125

chr6

21,508,407

2,864,816

13.32%

89

chr7

21,026,613

2,334,595

11.10%

80

chr8

22,385,789

2,028,352

9.06%

86

chr9

23,006,712

5,694,956

24.75%

167

chr10

18,140,952

3,413,632

18.82%

111

chr11

19,818,926

2,155,608

10.88%

82

chr12

22,702,307

4,358,297

19.20%

143

chr13

24,396,255

4,592,630

18.83%

139

chr14

30,274,277

4,521,418

14.93%

159

chr15

20,304,914

4,479,245

22.06%

134

chr16

22,053,297

5,531,029

25.08%

149

chr17

17,126,926

2,453,620

14.33%

91

chr18

29,360,087

4,551,888

15.50%

147

chr19

24,021,853

5,810,980

24.19%

173

Tot_nonrandom

426,176,009

71,408,191

16.76%

2,323

chr1_random

568,933

136,397

23.97%

2

chr3_random

1,220,746

297,331

24.36%

9

chr4_random

76,237

0

0.00%

0

chr5_random

421,237

0

0.00%

0

chr7_random

1,447,032

140,206

9.69%

5

chr9_random

487,831

137,370

28.16%

4

chr10_random

789,605

303,818

38.48%

3

chr11_random

282,498

0

0.00%

0

chr12_random

1,566,225

403,711

25.78%

10

chr13_random

3,268,264

1,079,980

33.04%

28

chr16_random

740,079

672,372

90.85%

8

chr17_random

829,735

126,189

15.21%

4

chr18_random

5,170,003

1,365,584

26.41%

36

Tot_random

16,868,425

4,662,958

27.64%

109

Tot_placed

443,044,434

76,071,149

17.17%

2,432

chrUn

43,154,196

8,876,440

20.57%

210

Tot_whole

486,198,630

84,947,589

17.47%

2,642


Size and percentage of segmentally duplicated regions and the number of duplicated intervals for: each chromosome, all nonrandom chromosomes (Tot_nonrandom, from chr1 to chr19), all random chromosomes (Tot_random, from chr1_random to chr18_random), all nonrandom and random chromosomes (Tot_placed), and the whole genome (Tot_whole).

Giannuzzi et al. BMC Genomics 2011 12:436   doi:10.1186/1471-2164-12-436

Open Data