Table 4

Correlation between the recombination sites and particular repeats

Paternal

Maternal

Both


Repeat

Number

Corr

P

Corr.

P

Corr.

P


SINE/MIR

510580

0.22

1E-16

0.30

1E-16

0.29

1E-16

DNA/hAT-Charlie

214901

0.18

1E-16

0.31

1E-16

0.29

1E-16

DNA/hAT

10624

0.16

3E-13

0.24

1E-16

0.23

1E-16

LINE/L2

397294

0.16

3E-13

0.22

1E-16

0.21

1E-16

SINE/Alu

926299

0.10

1E-04

0.22

1E-16

0.19

1E-16

DNA/hAT-Tip100

26087

0.10

3E-05

0.20

1E-16

0.18

1E-16

DNA/hAT-Blackjack

17019

0.15

4E-12

0.16

2E-13

0.17

1E-16

Simple_repeat

343474

0.19

1E-16

0.11

4E-06

0.16

8E-14

LINE/CR1

52244

0.09

4E-04

0.15

5E-12

0.13

9E-09

DNA/TcMar-Tc2

6979

0.11

1E-05

0.13

3E-08

0.13

3E-08

DNA/TcMar-Mariner

14046

0.10

5E-05

0.13

2E-08

0.12

2E-07

CpG

19661

0.06

2E-01

0.10

3E-05

0.11

1E-06

LTR/ERVL-MaLR

292520

0.11

2E-06

0.09

6E-04

0.11

8E-06

LTR/Gypsy?

6912

0.05

1

0.11

4E-06

0.08

2E-03

Unknown

6174

0.05

5E-01

0.06

4E-01

0.05

1

LINE/RTE

15421

0.04

1

0.06

2E-01

0.05

1

LTR/Gypsy

9429

0.02

1

0.04

1

0.03

1

DNA/TcMar-Tigger

87328

-0.01

1

0.04

1

0.01

1

LTR/ERVL

134989

-0.03

1

-0.03

1

-0.04

1

LTR/ERV1

139204

-0.13

7E-09

-0.10

6E-05

-0.13

2E-08

Low_complexity

314872

-0.11

3E-06

-0.17

6E-15

-0.18

1E-16

LTR/ERVK

8019

-0.19

1E-16

-0.16

3E-13

-0.19

1E-16

LINE/L1

767428

-0.16

8E-13

-0.19

1E-16

-0.20

1E-16


1. Repeat classes including more than 6000 repeats were considered for the purpose of analyses.

2. Corr.: correlation coefficients between the recombination sites and specific repeats.

3. P values under the null hypothesis of an absence of correlation. The Bonferroni's correction was applied for multiple comparisons. An adjusted P value > 1 was reported as 1.

4. The values in bold indicate a P value < 1E5

Lee et al. BMC Genomics 2011 12:434   doi:10.1186/1471-2164-12-434

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