Table 2

All 'Tnf'-related genes in the molecular optic nerve head dataset

Searched

Symbol

Representative Probe Set ID

Num Probe Sets

FC for Stage 1

QV for Stage 1

FC for Stage 2

QV for Stage 2

FC for Stage 3

QV for Stage 3

FC for Stage 4

QV for Stage 4

FC for Stage 5

QV for Stage 5


Tnfaip8l2

Tnfaip8l2

1452948_at

1

1.595

0.0182

2.084

0.0008

2.093

0.0002

2.113

0.002

1.75

0.0033

TNFR60

Tnfrsf1a

1417291_at

1

1.356

0.0512

1.731

0.0008

1.86

0.0002

1.897

0.0006

1.688

0.0018

tnfb94

Tnfaip2

1438855_x_at

3

1.716

0.0183

2.109

0.0002

1.823

0.0021

1.539

0.0237

1.653

0.0126

Tnfrsf9

Tnfrsf9

1460469_at

3

1.512

0.0677

1.73

0.0002

2.921

0.0003

2.816

0.0005

1.807

0.005

TNF-alphaR2

Tnfrsf1b

1418099_at

2

1.721

0.0831

2.098

0.0012

1.656

0.0078

2.381

0.002

2.264

0.0018

TNFCR

Ltbr

1416435_at

1

1.269

0.1862

1.667

0.0001

1.6

0.0015

1.564

0.0002

1.316

0.0081

Tnfrsf11b

Tnfrsf11b

1449033_at

2

1.872

0.1393

1.93

0.0106

1.614

0.0357

2.285

0.0099

2.354

0.0033

Tnfaip8

Tnfaip8

1416950_at

1

1.376

0.1972

1.548

0.0037

1.292

0.0629

1.701

0.0074

1.589

0.0085

Tnfsf13b

Tnfsf13b

1460255_at

3

1.399

0.2727

1.622

0.0009

1.776

0.0044

1.652

0.0088

1.826

0.0024

Tnfaip6

Tnfaip6

1418424_at

1

1.66

0.2211

1.643

0.0739

2.088

0.0086

4.611

0.0003

2.737

0.0031

Tnfrsf13b

Tnfrsf13b

1423182_at

1

1.284

0.272

1.79

0.0003

1.34

0.0408

2.029

0.0007

1.679

0.0066

Tnfip1

Tnfaip1

1448863_a_at

3

1.113

0.3315

1.295

0.0027

1.297

0.0015

1.469

0.0006

1.263

0.0025

Tnfrsf22

Tnfrsf22

1426095_a_at

4

1.331

0.3691

1.681

0.0098

1.672

0.0141

1.95

0.0048

1.537

0.009

Tnfrsf6

Fas

1460251_at

5

1.228

0.4172

1.545

0.0041

1.831

0.0038

1.755

0.0048

1.982

0.0025

Tnfrsf21

Tnfrsf21

1450731_s_at

2

1.166

0.3452

1.251

0.0098

1.363

0.0039

1.275

0.0225

1.218

0.0779

Tnfrsf12a

Tnfrsf12a

1418571_at

2

1.301

0.3733

1.497

0.0759

2.851

0.0003

3.947

0.0002

1.941

0.0102

Tnfaip9

Steap4

1460197_a_at

2

1.177

0.5803

1.734

0.0044

1.576

0.0295

1.563

0.0477

1.832

0.0061

Tnfrsf5

Cd40

1439221_s_at

3

1.144

0.4776

1.238

0.0049

1.438

0.0067

1.72

0.0057

1.122

0.183

Tnfrsf10b

Tnfrsf10b

1421296_at

2

1.335

0.3902

1.694

0.0074

1.609

0.0227

1.651

0.0194

1.099

0.3627

Tnfsf13

Tnfsf13

1418345_at

1

1.077

0.721

1.357

0.0094

1.328

0.0281

1.303

0.0875

1.431

0.0147

Tnfip3

Tnfaip3

1433699_at

2

-1.182

0.5997

-1.476

0.0076

-1.295

0.1286

-1.459

0.0288

-1.187

0.1717

Tnfrsf11a

Tnfrsf11a

1430259_at

2

1.105

0.5704

1.279

0.022

1.092

0.2354

1.252

0.1037

1.207

0.1559

Tnfa

Tnf

1419607_at

1

1.068

0.6746

1.164

0.1341

1.173

0.2162

1.197

0.0413

1.157

0.088

Tnfsf10

Tnfsf10

1459913_at

3

1.231

0.432

1.399

0.014

1.102

0.4007

1.134

0.3464

1.809

0.0027

Tnfrsf19

Tnfrsf19

1448147_at

3

1.281

0.2536

1.536

0.0052

1.023

0.5083

1.176

0.3387

1.208

0.0931

Tnfrsf13c

Tnfrsf13c

1419307_at

1

1.084

0.7361

1.172

0.2768

-1.554

0.0445

-1.61

0.0562

-1.395

0.0958

Tnfrsf18

Tnfrsf18

1422303_a_at

1

1.113

0.5149

1.268

0.053

1.24

0.0632

1.114

0.2903

1.072

0.2896

Tnfsf3l

Pglyrp1

1449184_at

1

-1.022

0.7984

1.241

0.1306

1.401

0.0694

1.273

0.1955

-1.363

0.099

TNF-beta

Lta

1420353_at

1

1.165

0.3119

1.054

0.3871

1.059

0.3635

1.118

0.2847

1.194

0.0614

Tnfrsf14

Tnfrsf14

1452425_at

1

1.034

0.7298

1.181

0.0819

1.08

0.2514

1.075

0.3767

1.196

0.0106

Tnfsf14

Tnfsf14

1450298_at

2

1.11

0.4399

1.213

0.0478

1.05

0.4048

1.192

0.161

1.037

0.4038

Tnfsf8

Tnfsf8

1450272_at

2

1.049

0.682

1.146

0.1413

1.105

0.2307

1.128

0.1819

1.076

0.3008

Tnfsf7

Cd70

1449926_at

1

1.075

0.6845

1.202

0.1024

1.09

0.3569

1.54

0.023

-1.028

0.439

Tnfsf11

Tnfsf11

1419083_at

2

1.121

0.65

1.3

0.1171

1.144

0.2947

1.013

0.5497

1.517

0.0236

Tnfrsf16

Ngfr

1454903_at

3

-1.085

0.6105

1.019

0.5138

1.023

0.5083

-1.606

0.0053

-1.449

0.0062

Tnfsf6

Fasl

1449235_at

2

1.037

0.7033

1.133

0.1216

1.115

0.2646

1.016

0.5184

1.253

0.05

Tnfrsf7

Cd27

1452389_at

1

1.05

0.6727

1.168

0.1289

1.177

0.165

1.098

0.2723

-1.001

0.4951

Tnfrsf25

Tnfrsf25

1422231_a_at

1

1.081

0.5818

1.112

0.2304

1.071

0.3705

1.086

0.353

-1.03

0.434

Tnfsf4

Tnfsf4

1421744_at

1

1.014

0.7928

1.112

0.2484

1.055

0.3972

1.045

0.4892

1.284

0.0442

Tnfsf5

Cd40lg

1422283_at

1

-1.032

0.7476

-1.093

0.1604

-1

0.546

-1.014

0.5263

1.187

0.0304

Tnfsf9

Tnfsf9

1422924_at

1

1.036

0.7722

1.119

0.3593

1.145

0.3207

-1.027

0.5346

1.363

0.0246

Tnfrsf23

Tnfrsf23

1422101_at

1

-1.003

0.814

1.024

0.5169

1.035

0.4692

1.268

0.1378

1.215

0.109

Tnfaip8l1

Tnfaip8l1

1449125_at

1

1.039

0.7492

1.073

0.3754

1.114

0.231

1.118

0.3217

1.039

0.3833

Tnfsf3

Ltb

1419135_at

1

-1.076

0.7049

1.057

0.3884

1.026

0.4906

1.142

0.2959

-1.122

0.2268

Tnfrsf19l

Relt

1455116_at

1

-1.055

0.7184

-1.009

0.5445

-1.151

0.1717

-1.124

0.3145

-1.043

0.4081

Tnfsf12

Tnfsf12

1452440_at

1

1.03

0.7513

-1.05

0.4461

1.066

0.3841

1.094

0.3333

1.107

0.2445

Tnfsf5ip1

Psmg2

1425373_a_at

2

-1.067

0.6716

-1.082

0.3645

1.119

0.1569

1.013

0.5411

-1.017

0.4574

Tnfrsf13

Tnfrsf17

1420782_at

1

-1.072

0.6676

-1.051

0.4316

-1.087

0.37

-1.033

0.5123

1.062

0.3875

Tnfrsf4

Tnfrsf4

1420351_at

1

-1.041

0.7555

-1.019

0.5272

1.047

0.4614

1.022

0.5351

1.031

0.4478

Tnfrsf8

Tnfrsf8

1421649_at

1

-1.002

0.8147

-1.005

0.5523

-1.028

0.4824

-1.001

0.5686

-1.051

0.3787


FC = Fold change, QV = Q value

Howell et al. BMC Genomics 2011 12:429   doi:10.1186/1471-2164-12-429

Open Data