Table 5

List of genes found in Cucumis melo mitochondrial genome

RNA genes

tRNAs

trnD-GTCa

trnE-TTCb

trnF-GAA

trnfM-CATb

trnG-GCCb

trnH-GTGb

trnH-GTG-cpc

trnI-CATb, d

trnL-CAAb

trnM-CAT

trnM-CAT-cpc

trnN-GTT

trnN-GTT-cpc

trnP-TGG

trnQ-TTG

trnR-ACG

trnR-ACG-cpc

trnS-GCTb

trnS-TGA

trnS-TGA-cpc

trnW-CCAe

trnY-GTA

Ψtrnf

ΨtrnC

rRNAs

rrn26

rrn18

rrn5a

Complex I

(NADH dehydrogenase)

nad1g, h, i

nad2i, j

nad3

nad4k

nad4Lg

nad5h, i

nad6

nad7h

nad9

Complex II

(succinate dehydrogenase)

sdh3

sdh4

Complex III

(ubiquinol cytochrome c reductase)

cob

Complex IV

(cytochrome c oxidase)

cox1j

cox2

cox3

ATP synthase

atp1

atp4

atp6

atp8

atp9

Other genes

Cytochrome C biogenesis

ccmB

ccmC

ccmFcj

ccmFn

Transport membrane

mttB

Maturase

matRl

Ribosomal proteins

rpl2j

rpl5

rpl16m

rps1

rps3j

rps4

rps7

rps10g, j

rps12

rps13

Conserved ORFs

ORF1n

ORF2o

ORF3p

ORF4q


Pseudogenes are symbolised by ψ

aThree gene copies

bTwo gene copies

cChloroplast origin

dC assumed to be post-transcriptionally modified to lysidine, which pairs with A, not G (see PubMed ID 1698276)

eSeven gene copies

fUndetermined anticodon

gRNA editing creates a codon

hGene contains five exons

iGene undergoes trans-splicing

jGene contains one intron

kGene contains four exons

lStart codon not determined

mAlternative start codon (see PubMed IDs 8193306 and 9327595)

nSimilar to chloroplast ycf2 gene

oSimilar to ORF150 in V. vinifera, ORF159b in Nicotiana, ORF168 in Marchantia and ORF187 in Physcomitrella

pSimilar to amino acid sequence GenBank ID CAA69750.1

qSimilar to 5' fragment of photosystem I P700 apoprotein A1

Rodríguez-Moreno et al. BMC Genomics 2011 12:424   doi:10.1186/1471-2164-12-424

Open Data