Table 3 |
|||||||
|
HLA calling accuracy and concordance with gold standard in 270 individuals |
|||||||
|
Population |
Concordant alleles |
Original type missing |
Original type incorrect |
Incorrect call due to low coverage |
Incorrect due to other reasons |
Total |
Accuracy |
|
|
|||||||
|
CEU |
457 |
66 |
6 |
10 |
1 |
540 (= 90 × 6) |
97.7% (463/474) |
|
|
|||||||
|
YRI |
485 |
8 |
16 |
29 |
2 |
540 (= 90 × 6) |
94.2% (501/532) |
|
|
|||||||
|
JPT |
246 |
6 |
9 |
5 |
4 |
270 (= 45 × 6) |
96.6% (255/264) |
|
|
|||||||
|
CHB |
258 |
0 |
7 |
5 |
0 |
270 (= 45 × 6) |
98.1% (265/270) |
|
|
|||||||
|
Total |
1446 |
80 |
38 |
49 |
7 |
1620 |
96.4% |
|
|
|||||||
|
Erlich et al. BMC Genomics 2011 12:42 doi:10.1186/1471-2164-12-42 |
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