Table 2

Depth of coverage per individual across loci and plate pools

Gene

Exon

Plate 1 Coverage

Plate 2 Coverage

Plate 3 Coverage

Average coverage per locus


HLA-A

2

159 ± 87

65 ± 37

91 ± 60

106 ± 76


HLA-A

3

144 ± 61

71 ± 36

101 ± 52

106 ± 59


HLA-B

2

177 ± 74

89 ± 50

105 ± 56

125 ± 73


HLA-B

3

159 ± 72

93 ± 45

111 ± 54

121 ± 65


HLA-C

2

85 ± 44

62 ± 44

81 ± 66

76 ± 52


HLA-C

3

102 ± 50

70 ± 36

84 ± 50

85 ± 47


Average coverage per plate

137 ± 74

75 ± 43

95 ± 58

103 ± 65


Erlich et al. BMC Genomics 2011 12:42   doi:10.1186/1471-2164-12-42

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