Table 5

Synteny blocks between T. cacao (Matina 1-6) physical map and reference genome assemblies

Reference Genome

1Anchors

1Block Hits

1One block

1Two blocks

Blocks (< 1 Mbp)

Blocks (1 Mbp - 3 Mbp)

Blocks (> 3 Mbp)


V. vinifera

13,807 (0)

3,266 (0)

2712 (0)

277 (0)

27

43

31

P. trichoptera

10,788 (57)

5,535 (15)

2,517 (7)

1,509 (4)

87

61

39

A. thaliana

5,391 (59)

697 (1)

583 (1)

61 (4)

50

14

4

T. cacao (Criollo)

37,504 (194)

26,739 (130)

21,765 (108)

2,487 (11)

56

25

31


1Total anchors (BES + genetic markers) with genetic marker subset in parentheses.

Saski et al. BMC Genomics 2011 12:413   doi:10.1186/1471-2164-12-413

Open Data