Table 4

Synteny coverage between T. cacao (Matina 1-6) physical map and reference genome assemblies

Reference Genome

Coverage Genome

Coverage

Double-coverage*


V. vinifera

T. cacao

87%

56%


V. vinifera

V. vinifera

73%

27%


P. trichoptera

T. cacao

91%

78%


P. trichoptera

P. trichoptera

78%

24%


A. thaliana

T. cacao

71%

35%


A. thaliana

A. thaliana

44%

13%


T. cacao (Criollo)

T. cacao (Matina 1-6)

97%

72%


T. cacao (Criollo)

T. cacao (Criollo)

65%

25%


*Double coverage is the fraction of sequence that is covered by more than one synteny block.

Saski et al. BMC Genomics 2011 12:413   doi:10.1186/1471-2164-12-413

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