Additional file 9.

Table S3. Output file of 725 SNP markers with top 100 effects per trait from least squares analysis and weighted least squares analysis. MY, milk yield; FY, fat yield; PY, protein yield; FPC, fat percentage; PPC, protein percentage; SCS, somatic cell score; DPR, daughter pregnancy rate; PL, productive life; SCE, sire calving ease; DCE, daughter calving ease; SSB, sire stillbirth; DSB, daughter stillbirth; NM, net merit. Subscript 'w' indicates P-values from weighted least squares analysis. Trait name with subscript 'w' indicates tests using weighted least squares, and trait name without subscript indicates tests using least squares.

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Cole et al. BMC Genomics 2011 12:408   doi:10.1186/1471-2164-12-408