Table 1

Genome sequences included in Figure 1

Ring number1

Genome

Accession

Reference


Ring 5

Enterohaemorrhagic E. coli O157:H7 str. EDL933

AE005174

[25]


Ring 6

Enterohaemorrhagic E. coli O157:H7 str. EC4115

CP001164

J. Craig Venter Institute


Ring 7

Non-pathogenic E. coli str. K12 substr. MG1655

U00096

[26]


Non-pathogenic E. coli str. K12 substr. W3110

AP009048

[27]


Non-pathogenic E. coli HS

CP000802

[28]


Ring 8

Non-pathogenic E. coli IAI1

CU928160

[29]


Ring 9

Non-pathogenic E. coli B str. REL606

CP000819

[30]


Ring 10

Environmental E. coli SMS-3-5

CP000970

[31]


Ring 11

Uropathogenic E. coli CFT073

AE014075

[32]


Ring 12

Uropathogenic E. coli UTI89

CP000243

[33]


Ring 13

Extraintestinal E. coli IAI39

CU928164

[29]


Ring 14

Extraintestinal E. coli UMN026

CU928163

[29]


Ring 15

Extraintestinal E. coli S88

CU928161

[29]


Ring 16

Salmonella enterica subsp. enterica serovar Heidelberg str. SL476

CP001120

J. Craig Venter Institute


Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853

CP001144

J. Craig Venter Institute


Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91

AM933173

[34]


Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7

CP000886

W.U. Genome Sequencing Center


Salmonella enterica subsp. enterica serovar Enteritidis str. P125109

AM933172

[34]


Salmonella enterica subsp. enterica serovar cholerasuis str. SC-B67

AE017220

[35]


Salmonella enterica subsp. enterica serovar Newport str. SL254

CP001113

J. Craig Venter Institute


Salmonella enterica subsp. enterica serovar Typhi str. CT18

AL513382

[36]


Salmonella enterica subsp. enterica serovar Typhi str. Ty2

FN424405

[37]


Salmonella enterica subsp. enterica serovar Agona str. SL483

CP001138

J. Craig Venter Institute


Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150

CP000026

[38]


Salmonella enterica subsp. enterica serovar Typhimurium str. LT2

AE006468

[39]


Salmonella enterica subsp. enterica serovar Paratyphi C str. RKS4594

CP000857

[40]


1 Genomes are listed as they appear on Figure 1, from innermost to outermost. Rings 1 to 4 correspond to GC-skew, GC-content, coverage and contig boundaries, respectively.

Alikhan et al. BMC Genomics 2011 12:402   doi:10.1186/1471-2164-12-402

Open Data