Additional file 4.
Table S4: Oregon Wolf Barley RAD EST/Genome Alignments. Bowtie alignments of OWB RAD markers to three sequence databases are provided: The Hordeum gene index (HvGI v10.2) from the Dana-Farber Cancer Institute, the MSU Rice Genome Annotation Project Release 6.0 (January 30, 2009) and the 8× Brachypodium Genome Assembly from brachypodium.org. The table columns detail, from left to right: the OWB marker name, sequence alignment orientation, the name (either EST/contig/chromosome identifier) and position (in bp) of the sequence alignment within the reference assembly, the sequence of the RAD marker and any variations observed between query (RAD marker) and reference. Variations are reported as: position in read, reference allele and query allele.
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Chutimanitsakun et al. BMC Genomics 2011 12:4 doi:10.1186/1471-2164-12-4