Table 2

The DE genes associated with immune and inflammatory responses on PID 7

Functional

classification

Gene description

Gene symbol

Fold Change

Gen Bank ID


Rep:CD274 molecule CD274, mRNA- Homo sapiens

CD274

2.648947

EW655654

immune

Sus scrofa complement component C6

C6

2.660923

NM_001097449

response

Sus scrofa lymphocyte cytosolic protein 2

LCP2

2.461111

AK230876

Rep:Sus scrofa tumor necrosis factor superfamily member 18 mRNA

TNFSF18

2.5221772

DQ995649

Sus scrofa interleukin 2 receptor, alpha

IL2RA

3.3108058

NM_213835

Sus scrofa C-type lectin domain family 5, member A

CLEC5A

4.702034

NM_213990

Sus scrofa interferon stimulited exonuclease gene 20 kDa

ISG20

2.1768405

NM_001005351

Sus scrofa MHC class II DR-alpha (SLA-DRA)

SLA-DRA

2.0392556

NM_001113706.1

Sus scrofa secreted phosphoprotein 1

SPP1

3.411632

NM_214023

Sus scrofa lymphocyte-activation gene 3

LAG3

2.0111256

NM_001105306


Sus scrofa selectin E

SELE

9.232597

NM_214268

Sus scrofa chemokine ligand 26-like mRNA

CCL26

8.645769

NM_001078665

Sus scrofa Toll-like receptor 3

TLR3

7.331916

NM_001097444.1

Sus scrofa matrix metallopeptidase 25

MMP25

3.32788

NM_213905

Sus scrofa toll-like receptor 7

TLR7

3.262197

NM_001097434

inflammatory response

Sus scrofa interleukin 13

IL13

2.4685268

NM_213803

Sus scrofa sphingosine 1-phosphate receptor 3-like

S1PR3

2.293045

BP173206

chemokine (C-C motif) ligand 8

CCL8

2.0915823

NM_001164515.1

Sus scrofa S100 calcium binding protein A2

S100A2

2.04835

XM_001929556

Sus scrofa Toll-like receptor 5

TLR5

- 2.10299

NM_001123202

Rep: transforming growth factor, beta 2- Macaca mulatta

TGFB2

- 2.180843

EV858461

Rep: leukocyte cell-derived chemotaxin 2

LECT2

- 2.381497

NM_002302.2

Sus scrofa S100 calcium binding protein A16

S100A16

- 13.31639

NM_001190208.1


The DE genes associated with inflammatory response were assigned based on GO term and manual annotation. Manual annotations were listed in italics. Most genes could also be classified into other categories but only immune and inflammatory responses were considered.

Li et al. BMC Genomics 2011 12:398   doi:10.1186/1471-2164-12-398

Open Data